RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	CRCT1	Q9UGL9	99 aa		4.2	□□□□□ -1.74
TCF4-222	ENST00000564228	KRTAP10-7	P60409	375 aa	Predicted RBP	4.18	□□□□□ -1.74
TCF4-222	ENST00000564228	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.18	□□□□□ -1.74
TCF4-222	ENST00000564228	MT3	P25713	68 aa		4.17	□□□□□ -1.74
TCF4-222	ENST00000564228	LCE3B	Q5TA77	95 aa		4.17	□□□□□ -1.74
TCF4-222	ENST00000564228	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.16	□□□□□ -1.74
TCF4-222	ENST00000564228	KMT2D	O14686	5537 aa		4.09	□□□□□ -1.75
TCF4-222	ENST00000564228	LCE3C	Q5T5A8	94 aa		4.05	□□□□□ -1.76
TCF4-222	ENST00000564228	KRTAP4-8	A0A0G2JLE6	195 aa		4.05	□□□□□ -1.76
TCF4-222	ENST00000564228	MACF1	Q9UPN3	7388 aa	Known RBP	4.04	□□□□□ -1.76
TCF4-222	ENST00000564228	LCE1F	Q5T754	118 aa		4.02	□□□□□ -1.77
TCF4-222	ENST00000564228	KRTAP2-3	P0C7H8	128 aa		3.99	□□□□□ -1.77
TCF4-222	ENST00000564228	KRTAP2-4	Q9BYR9	128 aa		3.99	□□□□□ -1.77
TCF4-222	ENST00000564228	KRTAP2-1	Q9BYU5	128 aa		3.99	□□□□□ -1.77
TCF4-222	ENST00000564228	SYNE2	Q8WXH0	6885 aa	Known RBP	3.95	□□□□□ -1.78
TCF4-222	ENST00000564228	KRTAP19-5	Q3LI72	72 aa		3.93	□□□□□ -1.78
TCF4-222	ENST00000564228	KRTAP9-6	A8MVA2	160 aa		3.89	□□□□□ -1.79
TCF4-222	ENST00000564228	LCE1D	Q5T752	114 aa		3.89	□□□□□ -1.79
TCF4-222	ENST00000564228	KRTAP4-7	Q9BYR0	210 aa		3.88	□□□□□ -1.79
TCF4-222	ENST00000564228	KRTAP19-7	Q3SYF9	63 aa		3.87	□□□□□ -1.79
TCF4-222	ENST00000564228	SPRR2F	Q96RM1	72 aa		3.83	□□□□□ -1.8
TCF4-222	ENST00000564228	KRTAP2-2	Q9BYT5	123 aa		3.82	□□□□□ -1.8
TCF4-222	ENST00000564228	MT1E	P04732	61 aa		3.8	□□□□□ -1.8
TCF4-222	ENST00000564228	MUC12	Q9UKN1	5478 aa		3.8	□□□□□ -1.8
TCF4-222	ENST00000564228	KRTAP5-9	P26371	169 aa		3.77	□□□□□ -1.81
TCF4-222	ENST00000564228	KRTAP6-3	Q3LI67	103 aa		3.74	□□□□□ -1.81
TCF4-222	ENST00000564228	MT1L	Q93083	61 aa		3.72	□□□□□ -1.81
TCF4-222	ENST00000564228	KRTAP4-2	Q9BYR5	136 aa		3.7	□□□□□ -1.82
TCF4-222	ENST00000564228	MDN1	Q9NU22	5596 aa		3.69	□□□□□ -1.82
TCF4-222	ENST00000564228	KRTAP19-3	Q7Z4W3	81 aa		3.68	□□□□□ -1.82
TCF4-222	ENST00000564228	KRTAP4-11	Q9BYQ6	195 aa		3.67	□□□□□ -1.82
TCF4-222	ENST00000564228	KRTAP4-9	Q9BYQ8	210 aa		3.66	□□□□□ -1.82
TCF4-222	ENST00000564228	SPRR2E	P22531	72 aa		3.66	□□□□□ -1.82
TCF4-222	ENST00000564228	SPRR2B	P35325	72 aa		3.66	□□□□□ -1.82
TCF4-222	ENST00000564228	SPRR2A	P35326	72 aa		3.66	□□□□□ -1.82
TCF4-222	ENST00000564228	MT1G	P13640	62 aa		3.63	□□□□□ -1.83
TCF4-222	ENST00000564228	MT1M	Q8N339	61 aa		3.59	□□□□□ -1.83
TCF4-222	ENST00000564228	DST	Q03001	7570 aa	Known RBP	3.57	□□□□□ -1.84
TCF4-222	ENST00000564228	KRTAP4-3	Q9BYR4	195 aa		3.56	□□□□□ -1.84
TCF4-222	ENST00000564228	KRTAP12-4	P60329	112 aa		3.54	□□□□□ -1.84
TCF4-222	ENST00000564228	NEB	P20929	6669 aa		3.54	□□□□□ -1.84
TCF4-222	ENST00000564228	SPRR2D	P22532	72 aa		3.52	□□□□□ -1.85
TCF4-222	ENST00000564228	LCE3E	Q5T5B0	92 aa		3.42	□□□□□ -1.86
TCF4-222	ENST00000564228	MT1A	P04731	61 aa		3.31	□□□□□ -1.88
TCF4-222	ENST00000564228	KRTAP20-1	Q3LI63	56 aa		3.28	□□□□□ -1.88
TCF4-222	ENST00000564228	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.23	□□□□□ -1.89
TCF4-222	ENST00000564228	PRM1	P04553	51 aa		3.19	□□□□□ -1.9
TCF4-222	ENST00000564228	LCE3D	Q9BYE3	92 aa		3.17	□□□□□ -1.9
TCF4-222	ENST00000564228	KRTAP6-1	Q3LI64	71 aa		3.15	□□□□□ -1.91
TCF4-222	ENST00000564228	LCE1E	Q5T753	118 aa		3.13	□□□□□ -1.91
TCF4-222	ENST00000564228	SYNE1	Q8NF91	8797 aa	Known RBP	3.12	□□□□□ -1.91
TCF4-222	ENST00000564228	KRTAP5-4	Q6L8H1	288 aa		3.12	□□□□□ -1.91
TCF4-222	ENST00000564228	MT4	P47944	62 aa		3.08	□□□□□ -1.92
TCF4-222	ENST00000564228	KRTAP6-2	Q3LI66	62 aa		2.98	□□□□□ -1.93
TCF4-222	ENST00000564228	HMCN1	Q96RW7	5635 aa		2.97	□□□□□ -1.93
TCF4-222	ENST00000564228	KRTAP20-2	Q3LI61	65 aa		2.94	□□□□□ -1.94
TCF4-222	ENST00000564228	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.9	□□□□□ -1.95
TCF4-222	ENST00000564228	OBSCN	Q5VST9	7968 aa		2.82	□□□□□ -1.96
TCF4-222	ENST00000564228	KRTAP5-2	Q701N4	177 aa		2.81	□□□□□ -1.96
TCF4-222	ENST00000564228	AHNAK2	Q8IVF2	5795 aa		2.67	□□□□□ -1.98
TCF4-222	ENST00000564228	GPR98	Q8WXG9	6306 aa		2.61	□□□□□ -1.99
TCF4-222	ENST00000564228	KRTAP5-10	Q6L8G5	202 aa		2.53	□□□□□ -2
TCF4-222	ENST00000564228	KRTAP5-11	Q6L8G4	156 aa		2.5	□□□□□ -2.01
TCF4-222	ENST00000564228	KRTAP5-8	O75690	187 aa		2.47	□□□□□ -2.01
TCF4-222	ENST00000564228	KRTAP5-1	Q6L8H4	278 aa		2.46	□□□□□ -2.02
TCF4-222	ENST00000564228	LCE1B	Q5T7P3	118 aa		2.39	□□□□□ -2.03
TCF4-222	ENST00000564228	MUC5AC	P98088	5654 aa		2.36	□□□□□ -2.03
TCF4-222	ENST00000564228	KRTAP4-4	Q9BYR3	166 aa		2.35	□□□□□ -2.03
TCF4-222	ENST00000564228	KRTAP5-7	Q6L8G8	165 aa		2.34	□□□□□ -2.03
TCF4-222	ENST00000564228	LCE1C	Q5T751	118 aa		2.32	□□□□□ -2.04
TCF4-222	ENST00000564228	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.15	□□□□□ -2.06
TCF4-222	ENST00000564228	KRTAP21-1	Q3LI58	79 aa		2.11	□□□□□ -2.07
TCF4-222	ENST00000564228	KRTAP21-2	Q3LI59	83 aa		2.05	□□□□□ -2.08
TCF4-222	ENST00000564228	AHNAK	Q09666	5890 aa	Known RBP	2.02	□□□□□ -2.09
TCF4-222	ENST00000564228	PHGR1	C9JFL3	82 aa		1.78	□□□□□ -2.13
TCF4-222	ENST00000564228	MUC19	Q7Z5P9	8384 aa		1.68	□□□□□ -2.14
TCF4-222	ENST00000564228	MUC16	Q8WXI7	14507 aa		1.15	□□□□□ -2.23

Retrieved 77 of 20,778 RNA–protein pairs in 49.7 ms