RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.26□□□□□ -1.41
GDE1-203ENST00000564172 SYNE2Q8WXH0 6885 aaKnown RBP6.26□□□□□ -1.41
GDE1-203ENST00000564172 MT1LQ93083 61 aa6.25□□□□□ -1.41
GDE1-203ENST00000564172 KRTAP5-9P26371 169 aa6.22□□□□□ -1.41
GDE1-203ENST00000564172 MUC12Q9UKN1 5478 aa6.21□□□□□ -1.42
GDE1-203ENST00000564172 LCE3CQ5T5A8 94 aa6.15□□□□□ -1.42
GDE1-203ENST00000564172 KRTAP19-4Q3LI73 84 aa6.14□□□□□ -1.43
GDE1-203ENST00000564172 KRTAP19-3Q7Z4W3 81 aa6.14□□□□□ -1.43
GDE1-203ENST00000564172 KRTAP2-3P0C7H8 128 aa6.11□□□□□ -1.43
GDE1-203ENST00000564172 KRTAP6-3Q3LI67 103 aa6.11□□□□□ -1.43
GDE1-203ENST00000564172 KRTAP2-4Q9BYR9 128 aa6.11□□□□□ -1.43
GDE1-203ENST00000564172 KRTAP2-1Q9BYU5 128 aa6.11□□□□□ -1.43
GDE1-203ENST00000564172 MT1GP13640 62 aa6.08□□□□□ -1.44
GDE1-203ENST00000564172 KRTAP4-7Q9BYR0 210 aa6.08□□□□□ -1.44
GDE1-203ENST00000564172 LCE5AQ5TCM9 118 aa6.04□□□□□ -1.44
GDE1-203ENST00000564172 LCE1AQ5T7P2 110 aa6.01□□□□□ -1.45
GDE1-203ENST00000564172 MT1MQ8N339 61 aa6.01□□□□□ -1.45
GDE1-203ENST00000564172 MDN1Q9NU22 5596 aa5.98□□□□□ -1.45
GDE1-203ENST00000564172 SPRR2EP22531 72 aa5.95□□□□□ -1.46
GDE1-203ENST00000564172 SPRR2BP35325 72 aa5.95□□□□□ -1.46
GDE1-203ENST00000564172 SPRR2AP35326 72 aa5.95□□□□□ -1.46
GDE1-203ENST00000564172 KRTAP9-7A8MTY7 169 aa5.93□□□□□ -1.46
GDE1-203ENST00000564172 KRTAP4-3Q9BYR4 195 aa5.92□□□□□ -1.46
GDE1-203ENST00000564172 KRTAP9-6A8MVA2 160 aa5.85□□□□□ -1.47
GDE1-203ENST00000564172 DSTQ03001 7570 aaKnown RBP5.76□□□□□ -1.49
GDE1-203ENST00000564172 SPRR2DP22532 72 aa5.73□□□□□ -1.49
GDE1-203ENST00000564172 LOC100996750A0A140TA64 210 aa5.71□□□□□ -1.5
GDE1-203ENST00000564172 NEBP20929 6669 aa5.63□□□□□ -1.51
GDE1-203ENST00000564172 KRTAP12-4P60329 112 aa5.54□□□□□ -1.52
GDE1-203ENST00000564172 LCE3BQ5TA77 95 aa5.51□□□□□ -1.53
GDE1-203ENST00000564172 KRTAP2-2Q9BYT5 123 aa5.47□□□□□ -1.53
GDE1-203ENST00000564172 KRTAP5-5Q701N2 237 aaPredicted RBP5.43□□□□□ -1.54
GDE1-203ENST00000564172 MT1AP04731 61 aa5.3□□□□□ -1.56
GDE1-203ENST00000564172 KRTAP6-1Q3LI64 71 aa5.27□□□□□ -1.57
GDE1-203ENST00000564172 KRTAP20-1Q3LI63 56 aa5.24□□□□□ -1.57
GDE1-203ENST00000564172 KRTAP5-4Q6L8H1 288 aa5.19□□□□□ -1.58
GDE1-203ENST00000564172 SYNE1Q8NF91 8797 aaKnown RBP5.18□□□□□ -1.58
GDE1-203ENST00000564172 LCE4AQ5TA78 99 aa5.08□□□□□ -1.6
GDE1-203ENST00000564172 KRTAP9-4Q9BYQ2 154 aa5.05□□□□□ -1.6
GDE1-203ENST00000564172 PRM1P04553 51 aa5□□□□□ -1.61
GDE1-203ENST00000564172 MT4P47944 62 aa5□□□□□ -1.61
GDE1-203ENST00000564172 KRTAP4-6Q9BYQ5 205 aa4.97□□□□□ -1.61
GDE1-203ENST00000564172 KRTAP4-9Q9BYQ8 210 aa4.96□□□□□ -1.62
GDE1-203ENST00000564172 LCE1DQ5T752 114 aa4.91□□□□□ -1.62
GDE1-203ENST00000564172 KRTAP6-2Q3LI66 62 aa4.86□□□□□ -1.63
GDE1-203ENST00000564172 KRTAP20-2Q3LI61 65 aa4.85□□□□□ -1.63
GDE1-203ENST00000564172 LCE3EQ5T5B0 92 aa4.83□□□□□ -1.64
GDE1-203ENST00000564172 HMCN1Q96RW7 5635 aa4.81□□□□□ -1.64
GDE1-203ENST00000564172 MT3P25713 68 aa4.81□□□□□ -1.64
GDE1-203ENST00000564172 LCE1EQ5T753 118 aa4.78□□□□□ -1.64
GDE1-203ENST00000564172 LCE3DQ9BYE3 92 aa4.77□□□□□ -1.65
GDE1-203ENST00000564172 KRTAP5-2Q701N4 177 aa4.7□□□□□ -1.66
GDE1-203ENST00000564172 KRTAP5-3Q6L8H2 238 aa4.68□□□□□ -1.66
GDE1-203ENST00000564172 OBSCNQ5VST9 7968 aa4.52□□□□□ -1.69
GDE1-203ENST00000564172 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
GDE1-203ENST00000564172 AHNAK2Q8IVF2 5795 aa4.23□□□□□ -1.73
GDE1-203ENST00000564172 KRTAP4-11Q9BYQ6 195 aa4.22□□□□□ -1.73
GDE1-203ENST00000564172 KRTAP5-10Q6L8G5 202 aa4.08□□□□□ -1.76
GDE1-203ENST00000564172 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
GDE1-203ENST00000564172 KRTAP5-8O75690 187 aa4.06□□□□□ -1.76
GDE1-203ENST00000564172 GPR98Q8WXG9 6306 aa4□□□□□ -1.77
GDE1-203ENST00000564172 LCE1BQ5T7P3 118 aa3.94□□□□□ -1.78
GDE1-203ENST00000564172 KRTAP5-7Q6L8G8 165 aa3.91□□□□□ -1.78
GDE1-203ENST00000564172 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
GDE1-203ENST00000564172 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
GDE1-203ENST00000564172 MUC5ACP98088 5654 aa3.88□□□□□ -1.79
GDE1-203ENST00000564172 KRTAP9-9Q9BYP9 154 aa3.65□□□□□ -1.83
GDE1-203ENST00000564172 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
GDE1-203ENST00000564172 KRTAP21-2Q3LI59 83 aa3.46□□□□□ -1.86
GDE1-203ENST00000564172 MUC5BQ9HC84 5762 aaPredicted RBP3.46□□□□□ -1.86
GDE1-203ENST00000564172 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
GDE1-203ENST00000564172 KRTAP21-1Q3LI58 79 aa3.38□□□□□ -1.87
GDE1-203ENST00000564172 KRTAP4-12Q9BQ66 201 aa3.27□□□□□ -1.89
GDE1-203ENST00000564172 AHNAKQ09666 5890 aaKnown RBP3.25□□□□□ -1.89
GDE1-203ENST00000564172 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
GDE1-203ENST00000564172 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
GDE1-203ENST00000564172 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
GDE1-203ENST00000564172 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 109.6 ms