RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FCGBPQ9Y6R7 5405 aaPredicted RBP4.58□□□□□ -1.68
CLN3-210ENST00000563874 KRTAP2-3P0C7H8 128 aa4.54□□□□□ -1.68
CLN3-210ENST00000563874 KRTAP2-4Q9BYR9 128 aa4.54□□□□□ -1.68
CLN3-210ENST00000563874 KRTAP2-1Q9BYU5 128 aa4.54□□□□□ -1.68
CLN3-210ENST00000563874 MT1LQ93083 61 aa4.52□□□□□ -1.69
CLN3-210ENST00000563874 MT1EP04732 61 aa4.49□□□□□ -1.69
CLN3-210ENST00000563874 KRTAP19-6Q3LI70 58 aa4.47□□□□□ -1.69
CLN3-210ENST00000563874 MACF1Q9UPN3 7388 aaKnown RBP4.46□□□□□ -1.7
CLN3-210ENST00000563874 SYNE2Q8WXH0 6885 aaKnown RBP4.43□□□□□ -1.7
CLN3-210ENST00000563874 KRTAP6-3Q3LI67 103 aa4.42□□□□□ -1.7
CLN3-210ENST00000563874 LOC100996750A0A140TA64 210 aa4.38□□□□□ -1.71
CLN3-210ENST00000563874 KRTAP4-3Q9BYR4 195 aa4.38□□□□□ -1.71
CLN3-210ENST00000563874 MUC12Q9UKN1 5478 aa4.35□□□□□ -1.71
CLN3-210ENST00000563874 KRTAP19-4Q3LI73 84 aa4.34□□□□□ -1.72
CLN3-210ENST00000563874 MT1GP13640 62 aa4.31□□□□□ -1.72
CLN3-210ENST00000563874 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
CLN3-210ENST00000563874 NEBP20929 6669 aa4.26□□□□□ -1.73
CLN3-210ENST00000563874 KRTAP20-1Q3LI63 56 aa4.21□□□□□ -1.74
CLN3-210ENST00000563874 MT1MQ8N339 61 aa4.2□□□□□ -1.74
CLN3-210ENST00000563874 KRTAP19-3Q7Z4W3 81 aa4.17□□□□□ -1.74
CLN3-210ENST00000563874 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
CLN3-210ENST00000563874 KRTAP12-4P60329 112 aa4.12□□□□□ -1.75
CLN3-210ENST00000563874 KRTAP5-9P26371 169 aa4.1□□□□□ -1.75
CLN3-210ENST00000563874 SYNE1Q8NF91 8797 aaKnown RBP4.04□□□□□ -1.76
CLN3-210ENST00000563874 LCE1AQ5T7P2 110 aa4.04□□□□□ -1.76
CLN3-210ENST00000563874 LCE3BQ5TA77 95 aa4.03□□□□□ -1.76
CLN3-210ENST00000563874 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
CLN3-210ENST00000563874 KRTAP4-9Q9BYQ8 210 aa4.01□□□□□ -1.77
CLN3-210ENST00000563874 LCE5AQ5TCM9 118 aa4□□□□□ -1.77
CLN3-210ENST00000563874 MDN1Q9NU22 5596 aa3.97□□□□□ -1.77
CLN3-210ENST00000563874 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
CLN3-210ENST00000563874 SPRR2EP22531 72 aa3.93□□□□□ -1.78
CLN3-210ENST00000563874 SPRR2BP35325 72 aa3.93□□□□□ -1.78
CLN3-210ENST00000563874 SPRR2AP35326 72 aa3.93□□□□□ -1.78
CLN3-210ENST00000563874 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CLN3-210ENST00000563874 SPRR2DP22532 72 aa3.81□□□□□ -1.8
CLN3-210ENST00000563874 MT1AP04731 61 aa3.78□□□□□ -1.8
CLN3-210ENST00000563874 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
CLN3-210ENST00000563874 LCE1DQ5T752 114 aa3.76□□□□□ -1.81
CLN3-210ENST00000563874 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
CLN3-210ENST00000563874 LCE3EQ5T5B0 92 aa3.72□□□□□ -1.81
CLN3-210ENST00000563874 KRTAP5-5Q701N2 237 aaPredicted RBP3.68□□□□□ -1.82
CLN3-210ENST00000563874 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
CLN3-210ENST00000563874 PRM1P04553 51 aa3.67□□□□□ -1.82
CLN3-210ENST00000563874 GPR98Q8WXG9 6306 aa3.64□□□□□ -1.83
CLN3-210ENST00000563874 KRTAP9-4Q9BYQ2 154 aa3.52□□□□□ -1.85
CLN3-210ENST00000563874 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
CLN3-210ENST00000563874 LCE4AQ5TA78 99 aa3.38□□□□□ -1.87
CLN3-210ENST00000563874 MT3P25713 68 aa3.37□□□□□ -1.87
CLN3-210ENST00000563874 HMCN1Q96RW7 5635 aa3.33□□□□□ -1.88
CLN3-210ENST00000563874 MT4P47944 62 aa3.32□□□□□ -1.88
CLN3-210ENST00000563874 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
CLN3-210ENST00000563874 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
CLN3-210ENST00000563874 KRTAP9-9Q9BYP9 154 aa3.26□□□□□ -1.89
CLN3-210ENST00000563874 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
CLN3-210ENST00000563874 KRTAP5-7Q6L8G8 165 aa3.2□□□□□ -1.9
CLN3-210ENST00000563874 KRTAP4-6Q9BYQ5 205 aa3.18□□□□□ -1.9
CLN3-210ENST00000563874 KRTAP5-3Q6L8H2 238 aa3.15□□□□□ -1.91
CLN3-210ENST00000563874 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
CLN3-210ENST00000563874 KRTAP20-2Q3LI61 65 aa3.06□□□□□ -1.92
CLN3-210ENST00000563874 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
CLN3-210ENST00000563874 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
CLN3-210ENST00000563874 KRTAP4-11Q9BYQ6 195 aa2.86□□□□□ -1.95
CLN3-210ENST00000563874 AHNAKQ09666 5890 aaKnown RBP2.86□□□□□ -1.95
CLN3-210ENST00000563874 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
CLN3-210ENST00000563874 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
CLN3-210ENST00000563874 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
CLN3-210ENST00000563874 MUC5BQ9HC84 5762 aaPredicted RBP2.73□□□□□ -1.97
CLN3-210ENST00000563874 KRTAP5-1Q6L8H4 278 aa2.63□□□□□ -1.99
CLN3-210ENST00000563874 KRTAP4-2Q9BYR5 136 aa2.6□□□□□ -1.99
CLN3-210ENST00000563874 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
CLN3-210ENST00000563874 KRTAP21-2Q3LI59 83 aa2.47□□□□□ -2.01
CLN3-210ENST00000563874 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
CLN3-210ENST00000563874 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
CLN3-210ENST00000563874 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
CLN3-210ENST00000563874 KRTAP5-11Q6L8G4 156 aa2.16□□□□□ -2.06
CLN3-210ENST00000563874 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
CLN3-210ENST00000563874 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 141.6 ms