RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KMT2DO14686 5537 aa3.35□□□□□ -1.87
VPS39-205ENST00000562258 SPRR2DP22532 72 aa3.34□□□□□ -1.88
VPS39-205ENST00000562258 FCGBPQ9Y6R7 5405 aaPredicted RBP3.28□□□□□ -1.88
VPS39-205ENST00000562258 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
VPS39-205ENST00000562258 KRTAP4-7Q9BYR0 210 aa3.25□□□□□ -1.89
VPS39-205ENST00000562258 KRTAP9-7A8MTY7 169 aa3.24□□□□□ -1.89
VPS39-205ENST00000562258 MT1GP13640 62 aa3.24□□□□□ -1.89
VPS39-205ENST00000562258 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
VPS39-205ENST00000562258 SSPOA2VEC9 5147 aa3.22□□□□□ -1.89
VPS39-205ENST00000562258 KRTAP19-3Q7Z4W3 81 aa3.19□□□□□ -1.9
VPS39-205ENST00000562258 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.19□□□□□ -1.9
VPS39-205ENST00000562258 MT1EP04732 61 aa3.17□□□□□ -1.9
VPS39-205ENST00000562258 MUC12Q9UKN1 5478 aa3.15□□□□□ -1.91
VPS39-205ENST00000562258 MT1LQ93083 61 aa3.14□□□□□ -1.91
VPS39-205ENST00000562258 KRTAP4-3Q9BYR4 195 aa3.13□□□□□ -1.91
VPS39-205ENST00000562258 KRTAP19-7Q3SYF9 63 aa3.09□□□□□ -1.92
VPS39-205ENST00000562258 LCE3BQ5TA77 95 aa3.09□□□□□ -1.92
VPS39-205ENST00000562258 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
VPS39-205ENST00000562258 MT1MQ8N339 61 aa3.06□□□□□ -1.92
VPS39-205ENST00000562258 MT4P47944 62 aa3.06□□□□□ -1.92
VPS39-205ENST00000562258 KRTAP6-3Q3LI67 103 aa3.04□□□□□ -1.92
VPS39-205ENST00000562258 KRTAP19-4Q3LI73 84 aa3.04□□□□□ -1.92
VPS39-205ENST00000562258 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
VPS39-205ENST00000562258 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
VPS39-205ENST00000562258 MDN1Q9NU22 5596 aa3□□□□□ -1.93
VPS39-205ENST00000562258 KRTAP20-1Q3LI63 56 aa2.97□□□□□ -1.93
VPS39-205ENST00000562258 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.94
VPS39-205ENST00000562258 KRTAP4-9Q9BYQ8 210 aa2.89□□□□□ -1.95
VPS39-205ENST00000562258 KRTAP2-3P0C7H8 128 aa2.87□□□□□ -1.95
VPS39-205ENST00000562258 KRTAP2-4Q9BYR9 128 aa2.87□□□□□ -1.95
VPS39-205ENST00000562258 LCE5AQ5TCM9 118 aa2.85□□□□□ -1.95
VPS39-205ENST00000562258 NEBP20929 6669 aa2.85□□□□□ -1.95
VPS39-205ENST00000562258 KRTAP2-2Q9BYT5 123 aa2.81□□□□□ -1.96
VPS39-205ENST00000562258 KRTAP2-1Q9BYU5 128 aa2.81□□□□□ -1.96
VPS39-205ENST00000562258 KRTAP5-9P26371 169 aa2.75□□□□□ -1.97
VPS39-205ENST00000562258 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
VPS39-205ENST00000562258 KRTAP9-6A8MVA2 160 aa2.74□□□□□ -1.97
VPS39-205ENST00000562258 MT3P25713 68 aa2.74□□□□□ -1.97
VPS39-205ENST00000562258 MT1AP04731 61 aa2.71□□□□□ -1.98
VPS39-205ENST00000562258 KRTAP6-1Q3LI64 71 aa2.69□□□□□ -1.98
VPS39-205ENST00000562258 LCE1DQ5T752 114 aa2.69□□□□□ -1.98
VPS39-205ENST00000562258 LCE1BQ5T7P3 118 aa2.66□□□□□ -1.98
VPS39-205ENST00000562258 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.99
VPS39-205ENST00000562258 GPR98Q8WXG9 6306 aa2.63□□□□□ -1.99
VPS39-205ENST00000562258 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
VPS39-205ENST00000562258 LCE4AQ5TA78 99 aa2.62□□□□□ -1.99
VPS39-205ENST00000562258 KRTAP4-6Q9BYQ5 205 aa2.56□□□□□ -2
VPS39-205ENST00000562258 KRTAP9-4Q9BYQ2 154 aa2.53□□□□□ -2
VPS39-205ENST00000562258 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
VPS39-205ENST00000562258 PRM1P04553 51 aa2.42□□□□□ -2.02
VPS39-205ENST00000562258 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
VPS39-205ENST00000562258 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
VPS39-205ENST00000562258 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
VPS39-205ENST00000562258 KRTAP9-9Q9BYP9 154 aa2.24□□□□□ -2.05
VPS39-205ENST00000562258 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
VPS39-205ENST00000562258 KRTAP4-11Q9BYQ6 195 aa2.2□□□□□ -2.06
VPS39-205ENST00000562258 KRTAP5-4Q6L8H1 288 aa2.19□□□□□ -2.06
VPS39-205ENST00000562258 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
VPS39-205ENST00000562258 LCE1EQ5T753 118 aa2.17□□□□□ -2.06
VPS39-205ENST00000562258 LCE1FQ5T754 118 aa2.17□□□□□ -2.06
VPS39-205ENST00000562258 KRTAP5-3Q6L8H2 238 aa2.17□□□□□ -2.06
VPS39-205ENST00000562258 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.07
VPS39-205ENST00000562258 KRTAP4-12Q9BQ66 201 aa2.08□□□□□ -2.08
VPS39-205ENST00000562258 KRTAP4-2Q9BYR5 136 aa2.08□□□□□ -2.08
VPS39-205ENST00000562258 KRTAP4-4Q9BYR3 166 aa1.98□□□□□ -2.09
VPS39-205ENST00000562258 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
VPS39-205ENST00000562258 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
VPS39-205ENST00000562258 KRTAP5-2Q701N4 177 aa1.88□□□□□ -2.11
VPS39-205ENST00000562258 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
VPS39-205ENST00000562258 KRTAP5-10Q6L8G5 202 aa1.76□□□□□ -2.13
VPS39-205ENST00000562258 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
VPS39-205ENST00000562258 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
VPS39-205ENST00000562258 PHGR1C9JFL3 82 aa1.54□□□□□ -2.16
VPS39-205ENST00000562258 KRTAP5-11Q6L8G4 156 aa1.53□□□□□ -2.16
VPS39-205ENST00000562258 KRTAP21-2Q3LI59 83 aa1.49□□□□□ -2.17
VPS39-205ENST00000562258 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.43□□□□□ -2.18
VPS39-205ENST00000562258 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
VPS39-205ENST00000562258 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 98.3 ms