RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
CLK3-206ENST00000562078 KRTAP19-7Q3SYF9 63 aa4.63□□□□□ -1.67
CLK3-206ENST00000562078 MACF1Q9UPN3 7388 aaKnown RBP4.61□□□□□ -1.67
CLK3-206ENST00000562078 KRTAP4-7Q9BYR0 210 aa4.58□□□□□ -1.68
CLK3-206ENST00000562078 SYNE2Q8WXH0 6885 aaKnown RBP4.53□□□□□ -1.68
CLK3-206ENST00000562078 MT1EP04732 61 aa4.51□□□□□ -1.69
CLK3-206ENST00000562078 MT1LQ93083 61 aa4.47□□□□□ -1.69
CLK3-206ENST00000562078 SPRR2FQ96RM1 72 aa4.44□□□□□ -1.7
CLK3-206ENST00000562078 MUC12Q9UKN1 5478 aa4.43□□□□□ -1.7
CLK3-206ENST00000562078 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.39□□□□□ -1.71
CLK3-206ENST00000562078 KRTAP12-4P60329 112 aa4.39□□□□□ -1.71
CLK3-206ENST00000562078 KRTAP19-4Q3LI73 84 aa4.36□□□□□ -1.71
CLK3-206ENST00000562078 KRTAP5-9P26371 169 aa4.33□□□□□ -1.72
CLK3-206ENST00000562078 KRTAP19-3Q7Z4W3 81 aa4.31□□□□□ -1.72
CLK3-206ENST00000562078 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
CLK3-206ENST00000562078 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
CLK3-206ENST00000562078 MT1GP13640 62 aa4.26□□□□□ -1.73
CLK3-206ENST00000562078 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
CLK3-206ENST00000562078 LOC100996750A0A140TA64 210 aa4.25□□□□□ -1.73
CLK3-206ENST00000562078 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
CLK3-206ENST00000562078 MT1MQ8N339 61 aa4.23□□□□□ -1.73
CLK3-206ENST00000562078 SPRR2EP22531 72 aa4.21□□□□□ -1.73
CLK3-206ENST00000562078 SPRR2BP35325 72 aa4.21□□□□□ -1.73
CLK3-206ENST00000562078 SPRR2AP35326 72 aa4.21□□□□□ -1.73
CLK3-206ENST00000562078 LCE5AQ5TCM9 118 aa4.21□□□□□ -1.73
CLK3-206ENST00000562078 LCE1AQ5T7P2 110 aa4.2□□□□□ -1.74
CLK3-206ENST00000562078 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
CLK3-206ENST00000562078 DSTQ03001 7570 aaKnown RBP4.09□□□□□ -1.76
CLK3-206ENST00000562078 SPRR2DP22532 72 aa4.06□□□□□ -1.76
CLK3-206ENST00000562078 NEBP20929 6669 aa4.05□□□□□ -1.76
CLK3-206ENST00000562078 KRTAP4-9Q9BYQ8 210 aa4.02□□□□□ -1.77
CLK3-206ENST00000562078 PRM1P04553 51 aa3.98□□□□□ -1.77
CLK3-206ENST00000562078 LCE3BQ5TA77 95 aa3.94□□□□□ -1.78
CLK3-206ENST00000562078 SYNE1Q8NF91 8797 aaKnown RBP3.92□□□□□ -1.78
CLK3-206ENST00000562078 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
CLK3-206ENST00000562078 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
CLK3-206ENST00000562078 LCE3DQ9BYE3 92 aa3.81□□□□□ -1.8
CLK3-206ENST00000562078 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
CLK3-206ENST00000562078 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
CLK3-206ENST00000562078 MT1AP04731 61 aa3.79□□□□□ -1.8
CLK3-206ENST00000562078 LCE1DQ5T752 114 aa3.73□□□□□ -1.81
CLK3-206ENST00000562078 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
CLK3-206ENST00000562078 KRTAP6-2Q3LI66 62 aa3.66□□□□□ -1.82
CLK3-206ENST00000562078 LCE1FQ5T754 118 aa3.64□□□□□ -1.83
CLK3-206ENST00000562078 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CLK3-206ENST00000562078 KRTAP5-4Q6L8H1 288 aa3.6□□□□□ -1.83
CLK3-206ENST00000562078 LCE4AQ5TA78 99 aa3.55□□□□□ -1.84
CLK3-206ENST00000562078 KRTAP9-4Q9BYQ2 154 aa3.55□□□□□ -1.84
CLK3-206ENST00000562078 MT4P47944 62 aa3.54□□□□□ -1.84
CLK3-206ENST00000562078 KRTAP4-6Q9BYQ5 205 aa3.48□□□□□ -1.85
CLK3-206ENST00000562078 HMCN1Q96RW7 5635 aa3.45□□□□□ -1.86
CLK3-206ENST00000562078 KRTAP20-2Q3LI61 65 aa3.4□□□□□ -1.87
CLK3-206ENST00000562078 MT3P25713 68 aa3.38□□□□□ -1.87
CLK3-206ENST00000562078 KRTAP5-2Q701N4 177 aa3.26□□□□□ -1.89
CLK3-206ENST00000562078 KRTAP5-3Q6L8H2 238 aa3.25□□□□□ -1.89
CLK3-206ENST00000562078 GPR98Q8WXG9 6306 aa3.24□□□□□ -1.89
CLK3-206ENST00000562078 AHNAK2Q8IVF2 5795 aa3.05□□□□□ -1.92
CLK3-206ENST00000562078 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
CLK3-206ENST00000562078 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
CLK3-206ENST00000562078 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
CLK3-206ENST00000562078 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.95
CLK3-206ENST00000562078 KRTAP5-1Q6L8H4 278 aa2.83□□□□□ -1.96
CLK3-206ENST00000562078 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
CLK3-206ENST00000562078 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
CLK3-206ENST00000562078 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
CLK3-206ENST00000562078 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
CLK3-206ENST00000562078 KRTAP4-2Q9BYR5 136 aa2.72□□□□□ -1.97
CLK3-206ENST00000562078 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
CLK3-206ENST00000562078 AHNAKQ09666 5890 aaKnown RBP2.52□□□□□ -2.01
CLK3-206ENST00000562078 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
CLK3-206ENST00000562078 KRTAP21-1Q3LI58 79 aa2.51□□□□□ -2.01
CLK3-206ENST00000562078 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
CLK3-206ENST00000562078 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
CLK3-206ENST00000562078 KRTAP5-11Q6L8G4 156 aa2.39□□□□□ -2.03
CLK3-206ENST00000562078 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
CLK3-206ENST00000562078 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
CLK3-206ENST00000562078 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
CLK3-206ENST00000562078 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 296.9 ms