RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PKD1P98161 4303 aa0.96□□□□□ -2.26
VPS13C-208ENST00000559119 VPS13BQ7Z7G8 4022 aa0.96□□□□□ -2.26
VPS13C-208ENST00000559119 TNXBP22105 4242 aa0.96□□□□□ -2.26
VPS13C-208ENST00000559119 HSPG2P98160 4391 aa0.96□□□□□ -2.26
VPS13C-208ENST00000559119 FAT2Q9NYQ8 4349 aa0.96□□□□□ -2.26
VPS13C-208ENST00000559119 KMT2CQ8NEZ4 4911 aaKnown RBP0.95□□□□□ -2.26
VPS13C-208ENST00000559119 FAT1Q14517 4588 aa0.95□□□□□ -2.26
VPS13C-208ENST00000559119 RYR3Q15413 4870 aa0.94□□□□□ -2.26
VPS13C-208ENST00000559119 KRTAP8-1Q8IUC2 63 aa0.93□□□□□ -2.26
VPS13C-208ENST00000559119 EPPK1P58107 5090 aaKnown RBP0.92□□□□□ -2.26
VPS13C-208ENST00000559119 BIRC6Q9NR09 4857 aa0.92□□□□□ -2.26
VPS13C-208ENST00000559119 SMR3BP02814 79 aaPredicted RBP0.91□□□□□ -2.26
VPS13C-208ENST00000559119 KIAA1109Q2LD37 5005 aa0.91□□□□□ -2.26
VPS13C-208ENST00000559119 FLGP20930 4061 aaPredicted RBP0.9□□□□□ -2.27
VPS13C-208ENST00000559119 RYR1P21817 5038 aa0.9□□□□□ -2.27
VPS13C-208ENST00000559119 HERC1Q15751 4861 aa0.9□□□□□ -2.27
VPS13C-208ENST00000559119 KRTAP19-2Q3LHN2 52 aa0.89□□□□□ -2.27
VPS13C-208ENST00000559119 PCLOQ9Y6V0 5065 aa0.89□□□□□ -2.27
VPS13C-208ENST00000559119 MT1HL1P0DM35 61 aa0.88□□□□□ -2.27
VPS13C-208ENST00000559119 HERC2O95714 4834 aa0.88□□□□□ -2.27
VPS13C-208ENST00000559119 KRTAP2-3P0C7H8 128 aa0.87□□□□□ -2.27
VPS13C-208ENST00000559119 SPRR2GQ9BYE4 73 aa0.87□□□□□ -2.27
VPS13C-208ENST00000559119 KRTAP2-4Q9BYR9 128 aa0.87□□□□□ -2.27
VPS13C-208ENST00000559119 KRTAP2-1Q9BYU5 128 aa0.87□□□□□ -2.27
VPS13C-208ENST00000559119 ABCA13Q86UQ4 5058 aa0.86□□□□□ -2.27
VPS13C-208ENST00000559119 LPAP08519 4548 aa0.84□□□□□ -2.27
VPS13C-208ENST00000559119 MUC17Q685J3 4493 aa0.84□□□□□ -2.28
VPS13C-208ENST00000559119 KRTAP19-8Q3LI54 63 aa0.82□□□□□ -2.28
VPS13C-208ENST00000559119 LRP2P98164 4655 aa0.82□□□□□ -2.28
VPS13C-208ENST00000559119 M0R2T5 61 aa0.8□□□□□ -2.28
VPS13C-208ENST00000559119 HMCN2Q8NDA2 5059 aa0.8□□□□□ -2.28
VPS13C-208ENST00000559119 MT1XP80297 61 aa0.79□□□□□ -2.28
VPS13C-208ENST00000559119 KRTAP19-5Q3LI72 72 aa0.79□□□□□ -2.28
VPS13C-208ENST00000559119 UBR4Q5T4S7 5183 aa0.79□□□□□ -2.28
VPS13C-208ENST00000559119 AHNAK2Q8IVF2 5795 aa0.77□□□□□ -2.29
VPS13C-208ENST00000559119 MT1BP07438 61 aa0.76□□□□□ -2.29
VPS13C-208ENST00000559119 FAT4Q6V0I7 4981 aa0.75□□□□□ -2.29
VPS13C-208ENST00000559119 MT2AP02795 61 aa0.74□□□□□ -2.29
VPS13C-208ENST00000559119 MT1EP04732 61 aa0.74□□□□□ -2.29
VPS13C-208ENST00000559119 RNF213Q63HN8 5207 aa0.74□□□□□ -2.29
VPS13C-208ENST00000559119 MT1AP04731 61 aa0.73□□□□□ -2.29
VPS13C-208ENST00000559119 MT1FP04733 61 aa0.73□□□□□ -2.29
VPS13C-208ENST00000559119 MT1LQ93083 61 aa0.72□□□□□ -2.29
VPS13C-208ENST00000559119 MUC2Q02817 5179 aa0.72□□□□□ -2.29
VPS13C-208ENST00000559119 MT1HP80294 61 aa0.71□□□□□ -2.3
VPS13C-208ENST00000559119 KRTAP19-7Q3SYF9 63 aa0.71□□□□□ -2.3
VPS13C-208ENST00000559119 PRM1P04553 51 aa0.67□□□□□ -2.3
VPS13C-208ENST00000559119 USH2AO75445 5202 aa0.64□□□□□ -2.31
VPS13C-208ENST00000559119 MT1GP13640 62 aa0.64□□□□□ -2.31
VPS13C-208ENST00000559119 FSIP2Q5CZC0 6907 aa0.63□□□□□ -2.31
VPS13C-208ENST00000559119 SSPOA2VEC9 5147 aa0.63□□□□□ -2.31
VPS13C-208ENST00000559119 SYNE2Q8WXH0 6885 aaKnown RBP0.63□□□□□ -2.31
VPS13C-208ENST00000559119 SPRR2FQ96RM1 72 aa0.63□□□□□ -2.31
VPS13C-208ENST00000559119 MT1MQ8N339 61 aa0.62□□□□□ -2.31
VPS13C-208ENST00000559119 SPRR2AP35326 72 aa0.61□□□□□ -2.31
VPS13C-208ENST00000559119 KRTAP6-2Q3LI66 62 aa0.61□□□□□ -2.31
VPS13C-208ENST00000559119 KRTAP19-6Q3LI70 58 aa0.61□□□□□ -2.31
VPS13C-208ENST00000559119 KRTAP19-3Q7Z4W3 81 aa0.61□□□□□ -2.31
VPS13C-208ENST00000559119 MACF1Q9UPN3 7388 aaKnown RBP0.6□□□□□ -2.31
VPS13C-208ENST00000559119 SPRR2BP35325 72 aa0.59□□□□□ -2.31
VPS13C-208ENST00000559119 NEBP20929 6669 aa0.58□□□□□ -2.32
VPS13C-208ENST00000559119 SPRR2EP22531 72 aa0.58□□□□□ -2.32
VPS13C-208ENST00000559119 KRTAP6-1Q3LI64 71 aa0.58□□□□□ -2.32
VPS13C-208ENST00000559119 KMT2DO14686 5537 aa0.57□□□□□ -2.32
VPS13C-208ENST00000559119 SPRR2DP22532 72 aa0.56□□□□□ -2.32
VPS13C-208ENST00000559119 MUC12Q9UKN1 5478 aa0.55□□□□□ -2.32
VPS13C-208ENST00000559119 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.32
VPS13C-208ENST00000559119 AHNAKQ09666 5890 aaKnown RBP0.5□□□□□ -2.33
VPS13C-208ENST00000559119 MDN1Q9NU22 5596 aa0.49□□□□□ -2.33
VPS13C-208ENST00000559119 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
VPS13C-208ENST00000559119 KRTAP20-1Q3LI63 56 aa0.49□□□□□ -2.33
VPS13C-208ENST00000559119 DSTQ03001 7570 aaKnown RBP0.47□□□□□ -2.33
VPS13C-208ENST00000559119 MUC5BQ9HC84 5762 aaPredicted RBP0.44□□□□□ -2.34
VPS13C-208ENST00000559119 MT4P47944 62 aa0.43□□□□□ -2.34
VPS13C-208ENST00000559119 MUC5ACP98088 5654 aa0.42□□□□□ -2.34
VPS13C-208ENST00000559119 KRTAP20-2Q3LI61 65 aa0.42□□□□□ -2.34
VPS13C-208ENST00000559119 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
VPS13C-208ENST00000559119 GPR98Q8WXG9 6306 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 122.1 ms