RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 KRTAP2-2Q9BYT5 123 aa3.07□□□□□ -1.92
VPS13C-206ENST00000558338 MT1FP04733 61 aa3.06□□□□□ -1.92
VPS13C-206ENST00000558338 KRTAP19-8Q3LI54 63 aa3.05□□□□□ -1.92
VPS13C-206ENST00000558338 RNF213Q63HN8 5207 aa3.04□□□□□ -1.92
VPS13C-206ENST00000558338 FAT4Q6V0I7 4981 aa3.01□□□□□ -1.93
VPS13C-206ENST00000558338 MT1BP07438 61 aa2.96□□□□□ -1.94
VPS13C-206ENST00000558338 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
VPS13C-206ENST00000558338 UBR4Q5T4S7 5183 aa2.94□□□□□ -1.94
VPS13C-206ENST00000558338 SPRR5A0A1B0GTR4 108 aa2.94□□□□□ -1.94
VPS13C-206ENST00000558338 KRTAP10-5P60370 271 aa2.92□□□□□ -1.94
VPS13C-206ENST00000558338 MT1XP80297 61 aa2.92□□□□□ -1.94
VPS13C-206ENST00000558338 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
VPS13C-206ENST00000558338 KRTAP8-1Q8IUC2 63 aa2.91□□□□□ -1.94
VPS13C-206ENST00000558338 MT3P25713 68 aa2.9□□□□□ -1.94
VPS13C-206ENST00000558338 INE1O15225 51 aa2.9□□□□□ -1.95
VPS13C-206ENST00000558338 KRTAP10-12P60413 245 aa2.9□□□□□ -1.95
VPS13C-206ENST00000558338 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
VPS13C-206ENST00000558338 KRTAP12-3P60328 96 aa2.84□□□□□ -1.96
VPS13C-206ENST00000558338 OBSCNQ5VST9 7968 aa2.83□□□□□ -1.96
VPS13C-206ENST00000558338 KRTAP4-3Q9BYR4 195 aa2.77□□□□□ -1.97
VPS13C-206ENST00000558338 KRTAP19-5Q3LI72 72 aa2.7□□□□□ -1.98
VPS13C-206ENST00000558338 KRTAP9-6A8MVA2 160 aa2.68□□□□□ -1.98
VPS13C-206ENST00000558338 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
VPS13C-206ENST00000558338 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
VPS13C-206ENST00000558338 KRTAP19-7Q3SYF9 63 aa2.6□□□□□ -1.99
VPS13C-206ENST00000558338 USH2AO75445 5202 aa2.6□□□□□ -1.99
VPS13C-206ENST00000558338 SSPOA2VEC9 5147 aa2.57□□□□□ -2
VPS13C-206ENST00000558338 KRTAP5-8O75690 187 aa2.56□□□□□ -2
VPS13C-206ENST00000558338 MT1EP04732 61 aa2.55□□□□□ -2
VPS13C-206ENST00000558338 MT1LQ93083 61 aa2.54□□□□□ -2
VPS13C-206ENST00000558338 KMT2DO14686 5537 aa2.49□□□□□ -2.01
VPS13C-206ENST00000558338 LCE3EQ5T5B0 92 aa2.45□□□□□ -2.02
VPS13C-206ENST00000558338 KRTAP2-3P0C7H8 128 aa2.44□□□□□ -2.02
VPS13C-206ENST00000558338 KRTAP2-4Q9BYR9 128 aa2.44□□□□□ -2.02
VPS13C-206ENST00000558338 KRTAP2-1Q9BYU5 128 aa2.44□□□□□ -2.02
VPS13C-206ENST00000558338 MT1GP13640 62 aa2.41□□□□□ -2.02
VPS13C-206ENST00000558338 KRTAP19-3Q7Z4W3 81 aa2.41□□□□□ -2.02
VPS13C-206ENST00000558338 MT1MQ8N339 61 aa2.39□□□□□ -2.03
VPS13C-206ENST00000558338 KRTAP6-3Q3LI67 103 aa2.36□□□□□ -2.03
VPS13C-206ENST00000558338 SPRR2FQ96RM1 72 aa2.33□□□□□ -2.04
VPS13C-206ENST00000558338 FCGBPQ9Y6R7 5405 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-206ENST00000558338 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
VPS13C-206ENST00000558338 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
VPS13C-206ENST00000558338 CRCT1Q9UGL9 99 aa2.24□□□□□ -2.05
VPS13C-206ENST00000558338 MUC12Q9UKN1 5478 aa2.23□□□□□ -2.05
VPS13C-206ENST00000558338 KRTAP12-4P60329 112 aa2.19□□□□□ -2.06
VPS13C-206ENST00000558338 MT1AP04731 61 aa2.17□□□□□ -2.06
VPS13C-206ENST00000558338 MACF1Q9UPN3 7388 aaKnown RBP2.16□□□□□ -2.06
VPS13C-206ENST00000558338 SPRR2EP22531 72 aa2.16□□□□□ -2.06
VPS13C-206ENST00000558338 SPRR2BP35325 72 aa2.16□□□□□ -2.06
VPS13C-206ENST00000558338 SPRR2AP35326 72 aa2.16□□□□□ -2.06
VPS13C-206ENST00000558338 KRTAP6-1Q3LI64 71 aa2.12□□□□□ -2.07
VPS13C-206ENST00000558338 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
VPS13C-206ENST00000558338 SPRR2DP22532 72 aa2.07□□□□□ -2.08
VPS13C-206ENST00000558338 SYNE2Q8WXH0 6885 aaKnown RBP2.05□□□□□ -2.08
VPS13C-206ENST00000558338 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
VPS13C-206ENST00000558338 DSTQ03001 7570 aaKnown RBP2.02□□□□□ -2.09
VPS13C-206ENST00000558338 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
VPS13C-206ENST00000558338 LCE1BQ5T7P3 118 aa2.01□□□□□ -2.09
VPS13C-206ENST00000558338 SYNE1Q8NF91 8797 aaKnown RBP1.95□□□□□ -2.1
VPS13C-206ENST00000558338 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
VPS13C-206ENST00000558338 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-206ENST00000558338 PRM1P04553 51 aa1.86□□□□□ -2.11
VPS13C-206ENST00000558338 NEBP20929 6669 aa1.83□□□□□ -2.12
VPS13C-206ENST00000558338 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
VPS13C-206ENST00000558338 MT4P47944 62 aa1.77□□□□□ -2.13
VPS13C-206ENST00000558338 KRTAP20-1Q3LI63 56 aa1.73□□□□□ -2.13
VPS13C-206ENST00000558338 MUC19Q7Z5P9 8384 aa1.71□□□□□ -2.14
VPS13C-206ENST00000558338 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
VPS13C-206ENST00000558338 KRTAP5-7Q6L8G8 165 aa1.63□□□□□ -2.15
VPS13C-206ENST00000558338 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
VPS13C-206ENST00000558338 KRTAP5-10Q6L8G5 202 aa1.53□□□□□ -2.16
VPS13C-206ENST00000558338 KRTAP21-2Q3LI59 83 aa1.48□□□□□ -2.17
VPS13C-206ENST00000558338 AHNAKQ09666 5890 aaKnown RBP1.43□□□□□ -2.18
VPS13C-206ENST00000558338 AHNAK2Q8IVF2 5795 aa1.37□□□□□ -2.19
VPS13C-206ENST00000558338 KRTAP21-1Q3LI58 79 aa1.19□□□□□ -2.22
VPS13C-206ENST00000558338 PHGR1C9JFL3 82 aa1.12□□□□□ -2.23
VPS13C-206ENST00000558338 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 63.4 ms