RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.46
NEDD4-212ENST00000557845 UQCR11O14957 56 aa5.88□□□□□ -1.47
NEDD4-212ENST00000557845 KRTAP4-3Q9BYR4 195 aa5.79□□□□□ -1.48
NEDD4-212ENST00000557845 LCE1DQ5T752 114 aa5.76□□□□□ -1.49
NEDD4-212ENST00000557845 LCE4AQ5TA78 99 aa5.76□□□□□ -1.49
NEDD4-212ENST00000557845 H3BS24 57 aa5.74□□□□□ -1.49
NEDD4-212ENST00000557845 KRTAP12-3P60328 96 aa5.74□□□□□ -1.49
NEDD4-212ENST00000557845 MIR22HGQ0VDD5 57 aa5.74□□□□□ -1.49
NEDD4-212ENST00000557845 KRTAP4-12Q9BQ66 201 aa5.74□□□□□ -1.49
NEDD4-212ENST00000557845 MT4P47944 62 aa5.69□□□□□ -1.5
NEDD4-212ENST00000557845 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
NEDD4-212ENST00000557845 KRTAP5-4Q6L8H1 288 aa5.66□□□□□ -1.5
NEDD4-212ENST00000557845 KRTAP25-1Q3LHN0 102 aa5.65□□□□□ -1.5
NEDD4-212ENST00000557845 K7ERS5 55 aa5.63□□□□□ -1.51
NEDD4-212ENST00000557845 V9GYY9 64 aa5.63□□□□□ -1.51
NEDD4-212ENST00000557845 PSPHP1O15172 72 aa5.62□□□□□ -1.51
NEDD4-212ENST00000557845 GPR98Q8WXG9 6306 aa5.62□□□□□ -1.51
NEDD4-212ENST00000557845 HMCN1Q96RW7 5635 aa5.61□□□□□ -1.51
NEDD4-212ENST00000557845 Q1T7F1 81 aa5.6□□□□□ -1.51
NEDD4-212ENST00000557845 KRTAP9-9Q9BYP9 154 aa5.53□□□□□ -1.52
NEDD4-212ENST00000557845 KRTAP9-4Q9BYQ2 154 aa5.53□□□□□ -1.52
NEDD4-212ENST00000557845 KRTAP23-1A1A580 65 aa5.46□□□□□ -1.54
NEDD4-212ENST00000557845 KRTAP19-4Q3LI73 84 aa5.44□□□□□ -1.54
NEDD4-212ENST00000557845 KRTAP5-5Q701N2 237 aaPredicted RBP5.43□□□□□ -1.54
NEDD4-212ENST00000557845 A6NED7 52 aa5.42□□□□□ -1.54
NEDD4-212ENST00000557845 AHNAK2Q8IVF2 5795 aa5.4□□□□□ -1.55
NEDD4-212ENST00000557845 KRTAP15-1Q3LI76 137 aa5.37□□□□□ -1.55
NEDD4-212ENST00000557845 KRTAP5-10Q6L8G5 202 aa5.34□□□□□ -1.55
NEDD4-212ENST00000557845 KRTAP20-2Q3LI61 65 aa5.33□□□□□ -1.56
NEDD4-212ENST00000557845 CDC42SE1Q9NRR8 79 aa5.32□□□□□ -1.56
NEDD4-212ENST00000557845 SPRR5A0A1B0GTR4 108 aa5.31□□□□□ -1.56
NEDD4-212ENST00000557845 KRTAP12-4P60329 112 aa5.3□□□□□ -1.56
NEDD4-212ENST00000557845 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
NEDD4-212ENST00000557845 RPS28P62857 69 aaKnown RBP5.29□□□□□ -1.56
NEDD4-212ENST00000557845 ROMO1P60602 79 aa5.25□□□□□ -1.57
NEDD4-212ENST00000557845 KRTAP5-3Q6L8H2 238 aa5.24□□□□□ -1.57
NEDD4-212ENST00000557845 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
NEDD4-212ENST00000557845 PCP4P48539 62 aa5.15□□□□□ -1.59
NEDD4-212ENST00000557845 KRTAP5-7Q6L8G8 165 aa5.14□□□□□ -1.59
NEDD4-212ENST00000557845 MT1AP04731 61 aa5.05□□□□□ -1.6
NEDD4-212ENST00000557845 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
NEDD4-212ENST00000557845 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
NEDD4-212ENST00000557845 KRTAP4-2Q9BYR5 136 aa4.97□□□□□ -1.61
NEDD4-212ENST00000557845 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
NEDD4-212ENST00000557845 KRTAP5-2Q701N4 177 aa4.95□□□□□ -1.62
NEDD4-212ENST00000557845 KRTAP6-2Q3LI66 62 aa4.8□□□□□ -1.64
NEDD4-212ENST00000557845 KRTAP5-8O75690 187 aa4.71□□□□□ -1.66
NEDD4-212ENST00000557845 MT3P25713 68 aa4.64□□□□□ -1.67
NEDD4-212ENST00000557845 OBSCNQ5VST9 7968 aa4.63□□□□□ -1.67
NEDD4-212ENST00000557845 BRK1Q8WUW1 75 aa4.6□□□□□ -1.67
NEDD4-212ENST00000557845 KRTAP5-1Q6L8H4 278 aa4.44□□□□□ -1.7
NEDD4-212ENST00000557845 MUC5BQ9HC84 5762 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-212ENST00000557845 MUC5ACP98088 5654 aa4.4□□□□□ -1.71
NEDD4-212ENST00000557845 AHNAKQ09666 5890 aaKnown RBP4.39□□□□□ -1.71
NEDD4-212ENST00000557845 PMAIP1Q13794 54 aa4.34□□□□□ -1.71
NEDD4-212ENST00000557845 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
NEDD4-212ENST00000557845 PRAC1Q96KF2 57 aa4.18□□□□□ -1.74
NEDD4-212ENST00000557845 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
NEDD4-212ENST00000557845 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
NEDD4-212ENST00000557845 PRO0628Q9UI54 55 aa3.93□□□□□ -1.78
NEDD4-212ENST00000557845 LCE3DQ9BYE3 92 aa3.82□□□□□ -1.8
NEDD4-212ENST00000557845 KTN1-AS1Q86SY8 53 aa3.78□□□□□ -1.8
NEDD4-212ENST00000557845 SVIPQ8NHG7 77 aa3.63□□□□□ -1.83
NEDD4-212ENST00000557845 LCE3EQ5T5B0 92 aa3.59□□□□□ -1.83
NEDD4-212ENST00000557845 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.59□□□□□ -1.83
NEDD4-212ENST00000557845 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
NEDD4-212ENST00000557845 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
NEDD4-212ENST00000557845 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
NEDD4-212ENST00000557845 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
NEDD4-212ENST00000557845 KRTAP21-2Q3LI59 83 aa3.32□□□□□ -1.88
NEDD4-212ENST00000557845 PHGR1C9JFL3 82 aa3.11□□□□□ -1.91
NEDD4-212ENST00000557845 KRTAP4-4Q9BYR3 166 aa3.04□□□□□ -1.92
NEDD4-212ENST00000557845 NDUFAF8A1L188 74 aa2.85□□□□□ -1.95
NEDD4-212ENST00000557845 MUC19Q7Z5P9 8384 aa2.82□□□□□ -1.96
NEDD4-212ENST00000557845 PRM1P04553 51 aa2.68□□□□□ -1.98
NEDD4-212ENST00000557845 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
NEDD4-212ENST00000557845 INE1O15225 51 aa2.2□□□□□ -2.06
NEDD4-212ENST00000557845 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 74.3 ms