RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	USH2A	O75445	5202 aa		5.54	□□□□□ -1.52
SHMT2-231	ENST00000557433	KRTAP4-7	Q9BYR0	210 aa		5.51	□□□□□ -1.53
SHMT2-231	ENST00000557433	SSPO	A2VEC9	5147 aa		5.45	□□□□□ -1.54
SHMT2-231	ENST00000557433	KMT2D	O14686	5537 aa		5.44	□□□□□ -1.54
SHMT2-231	ENST00000557433	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.35	□□□□□ -1.55
SHMT2-231	ENST00000557433	KRTAP19-6	Q3LI70	58 aa		5.33	□□□□□ -1.56
SHMT2-231	ENST00000557433	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.32	□□□□□ -1.56
SHMT2-231	ENST00000557433	KRTAP9-7	A8MTY7	169 aa		5.24	□□□□□ -1.57
SHMT2-231	ENST00000557433	MT1G	P13640	62 aa		5.21	□□□□□ -1.57
SHMT2-231	ENST00000557433	MACF1	Q9UPN3	7388 aa	Known RBP	5.18	□□□□□ -1.58
SHMT2-231	ENST00000557433	KRTAP19-3	Q7Z4W3	81 aa		5.18	□□□□□ -1.58
SHMT2-231	ENST00000557433	MT1M	Q8N339	61 aa		5.17	□□□□□ -1.58
SHMT2-231	ENST00000557433	LOC100996750	A0A140TA64	210 aa		5.13	□□□□□ -1.59
SHMT2-231	ENST00000557433	KRTAP4-3	Q9BYR4	195 aa		5.11	□□□□□ -1.59
SHMT2-231	ENST00000557433	SYNE2	Q8WXH0	6885 aa	Known RBP	5.1	□□□□□ -1.59
SHMT2-231	ENST00000557433	KRTAP12-4	P60329	112 aa		5.03	□□□□□ -1.6
SHMT2-231	ENST00000557433	KRTAP6-3	Q3LI67	103 aa		5	□□□□□ -1.61
SHMT2-231	ENST00000557433	LCE5A	Q5TCM9	118 aa		4.97	□□□□□ -1.61
SHMT2-231	ENST00000557433	MT1A	P04731	61 aa		4.89	□□□□□ -1.63
SHMT2-231	ENST00000557433	SPRR2F	Q96RM1	72 aa		4.82	□□□□□ -1.64
SHMT2-231	ENST00000557433	KRTAP5-9	P26371	169 aa		4.8	□□□□□ -1.64
SHMT2-231	ENST00000557433	LCE3B	Q5TA77	95 aa		4.8	□□□□□ -1.64
SHMT2-231	ENST00000557433	MUC12	Q9UKN1	5478 aa		4.78	□□□□□ -1.64
SHMT2-231	ENST00000557433	NEB	P20929	6669 aa		4.77	□□□□□ -1.65
SHMT2-231	ENST00000557433	KRTAP6-1	Q3LI64	71 aa		4.68	□□□□□ -1.66
SHMT2-231	ENST00000557433	LCE3D	Q9BYE3	92 aa		4.68	□□□□□ -1.66
SHMT2-231	ENST00000557433	MDN1	Q9NU22	5596 aa		4.68	□□□□□ -1.66
SHMT2-231	ENST00000557433	LCE3E	Q5T5B0	92 aa		4.66	□□□□□ -1.66
SHMT2-231	ENST00000557433	KRTAP4-9	Q9BYQ8	210 aa		4.64	□□□□□ -1.67
SHMT2-231	ENST00000557433	SPRR2E	P22531	72 aa		4.61	□□□□□ -1.67
SHMT2-231	ENST00000557433	SPRR2B	P35325	72 aa		4.61	□□□□□ -1.67
SHMT2-231	ENST00000557433	SPRR2A	P35326	72 aa		4.61	□□□□□ -1.67
SHMT2-231	ENST00000557433	KRTAP20-1	Q3LI63	56 aa		4.6	□□□□□ -1.67
SHMT2-231	ENST00000557433	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.58	□□□□□ -1.68
SHMT2-231	ENST00000557433	LCE1A	Q5T7P2	110 aa		4.56	□□□□□ -1.68
SHMT2-231	ENST00000557433	SYNE1	Q8NF91	8797 aa	Known RBP	4.53	□□□□□ -1.68
SHMT2-231	ENST00000557433	DST	Q03001	7570 aa	Known RBP	4.49	□□□□□ -1.69
SHMT2-231	ENST00000557433	PRM1	P04553	51 aa		4.46	□□□□□ -1.7
SHMT2-231	ENST00000557433	SPRR2D	P22532	72 aa		4.45	□□□□□ -1.7
SHMT2-231	ENST00000557433	KRTAP9-4	Q9BYQ2	154 aa		4.43	□□□□□ -1.7
SHMT2-231	ENST00000557433	KRTAP2-2	Q9BYT5	123 aa		4.37	□□□□□ -1.71
SHMT2-231	ENST00000557433	KRTAP6-2	Q3LI66	62 aa		4.29	□□□□□ -1.72
SHMT2-231	ENST00000557433	KRTAP4-6	Q9BYQ5	205 aa		4.28	□□□□□ -1.72
SHMT2-231	ENST00000557433	MT3	P25713	68 aa		4.26	□□□□□ -1.73
SHMT2-231	ENST00000557433	KRTAP4-12	Q9BQ66	201 aa		4.03	□□□□□ -1.76
SHMT2-231	ENST00000557433	LCE4A	Q5TA78	99 aa		4.01	□□□□□ -1.77
SHMT2-231	ENST00000557433	KRTAP5-4	Q6L8H1	288 aa		3.95	□□□□□ -1.78
SHMT2-231	ENST00000557433	LCE1D	Q5T752	114 aa		3.91	□□□□□ -1.78
SHMT2-231	ENST00000557433	MT4	P47944	62 aa		3.9	□□□□□ -1.78
SHMT2-231	ENST00000557433	KRTAP9-9	Q9BYP9	154 aa		3.89	□□□□□ -1.79
SHMT2-231	ENST00000557433	OBSCN	Q5VST9	7968 aa		3.84	□□□□□ -1.79
SHMT2-231	ENST00000557433	HMCN1	Q96RW7	5635 aa		3.81	□□□□□ -1.8
SHMT2-231	ENST00000557433	GPR98	Q8WXG9	6306 aa		3.77	□□□□□ -1.81
SHMT2-231	ENST00000557433	KRTAP5-2	Q701N4	177 aa		3.74	□□□□□ -1.81
SHMT2-231	ENST00000557433	KRTAP20-2	Q3LI61	65 aa		3.66	□□□□□ -1.82
SHMT2-231	ENST00000557433	AHNAK2	Q8IVF2	5795 aa		3.63	□□□□□ -1.83
SHMT2-231	ENST00000557433	KRTAP5-10	Q6L8G5	202 aa		3.58	□□□□□ -1.84
SHMT2-231	ENST00000557433	KRTAP5-3	Q6L8H2	238 aa		3.54	□□□□□ -1.84
SHMT2-231	ENST00000557433	LCE1E	Q5T753	118 aa		3.48	□□□□□ -1.85
SHMT2-231	ENST00000557433	KRTAP4-11	Q9BYQ6	195 aa		3.44	□□□□□ -1.86
SHMT2-231	ENST00000557433	MUC5AC	P98088	5654 aa		3.44	□□□□□ -1.86
SHMT2-231	ENST00000557433	KRTAP5-7	Q6L8G8	165 aa		3.43	□□□□□ -1.86
SHMT2-231	ENST00000557433	KRTAP5-1	Q6L8H4	278 aa		3.36	□□□□□ -1.87
SHMT2-231	ENST00000557433	KRTAP4-2	Q9BYR5	136 aa		3.36	□□□□□ -1.87
SHMT2-231	ENST00000557433	LCE1B	Q5T7P3	118 aa		3.28	□□□□□ -1.88
SHMT2-231	ENST00000557433	LCE1C	Q5T751	118 aa		3.27	□□□□□ -1.89
SHMT2-231	ENST00000557433	KRTAP5-8	O75690	187 aa		3.2	□□□□□ -1.9
SHMT2-231	ENST00000557433	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.13	□□□□□ -1.91
SHMT2-231	ENST00000557433	KRTAP21-2	Q3LI59	83 aa		3.05	□□□□□ -1.92
SHMT2-231	ENST00000557433	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.98	□□□□□ -1.93
SHMT2-231	ENST00000557433	AHNAK	Q09666	5890 aa	Known RBP	2.96	□□□□□ -1.93
SHMT2-231	ENST00000557433	LCE1F	Q5T754	118 aa		2.94	□□□□□ -1.94
SHMT2-231	ENST00000557433	KRTAP21-1	Q3LI58	79 aa		2.89	□□□□□ -1.95
SHMT2-231	ENST00000557433	KRTAP5-11	Q6L8G4	156 aa		2.79	□□□□□ -1.96
SHMT2-231	ENST00000557433	KRTAP4-4	Q9BYR3	166 aa		2.64	□□□□□ -1.99
SHMT2-231	ENST00000557433	MUC19	Q7Z5P9	8384 aa		2.44	□□□□□ -2.02
SHMT2-231	ENST00000557433	PHGR1	C9JFL3	82 aa		2.38	□□□□□ -2.03
SHMT2-231	ENST00000557433	MUC16	Q8WXI7	14507 aa		1.66	□□□□□ -2.14

Retrieved 78 of 20,778 RNA–protein pairs in 93.9 ms