RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 USH2AO75445 5202 aa4.51□□□□□ -1.69
SHMT2-226ENST00000556825 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
SHMT2-226ENST00000556825 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
SHMT2-226ENST00000556825 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
SHMT2-226ENST00000556825 LCE1AQ5T7P2 110 aa4.46□□□□□ -1.69
SHMT2-226ENST00000556825 MACF1Q9UPN3 7388 aaKnown RBP4.43□□□□□ -1.7
SHMT2-226ENST00000556825 SYNE2Q8WXH0 6885 aaKnown RBP4.41□□□□□ -1.7
SHMT2-226ENST00000556825 KMT2DO14686 5537 aa4.4□□□□□ -1.7
SHMT2-226ENST00000556825 KRTAP20-1Q3LI63 56 aa4.39□□□□□ -1.71
SHMT2-226ENST00000556825 KRTAP4-8A0A0G2JLE6 195 aa4.36□□□□□ -1.71
SHMT2-226ENST00000556825 KRTAP4-8Q9BYQ9 185 aa4.36□□□□□ -1.71
SHMT2-226ENST00000556825 NEBP20929 6669 aa4.35□□□□□ -1.71
SHMT2-226ENST00000556825 KRTAP19-6Q3LI70 58 aa4.35□□□□□ -1.71
SHMT2-226ENST00000556825 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
SHMT2-226ENST00000556825 PRM1P04553 51 aa4.27□□□□□ -1.73
SHMT2-226ENST00000556825 MT1LQ93083 61 aa4.24□□□□□ -1.73
SHMT2-226ENST00000556825 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
SHMT2-226ENST00000556825 MT1EP04732 61 aa4.17□□□□□ -1.74
SHMT2-226ENST00000556825 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.74
SHMT2-226ENST00000556825 LOC100996750A0A140TA64 210 aa4.13□□□□□ -1.75
SHMT2-226ENST00000556825 MT1AP04731 61 aa4.08□□□□□ -1.76
SHMT2-226ENST00000556825 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
SHMT2-226ENST00000556825 MUC12Q9UKN1 5478 aa4.05□□□□□ -1.76
SHMT2-226ENST00000556825 LCE3EQ5T5B0 92 aa4.05□□□□□ -1.76
SHMT2-226ENST00000556825 LCE1DQ5T752 114 aa4.04□□□□□ -1.76
SHMT2-226ENST00000556825 MT1GP13640 62 aa4.03□□□□□ -1.76
SHMT2-226ENST00000556825 KRTAP4-9Q9BYQ8 210 aa4.02□□□□□ -1.77
SHMT2-226ENST00000556825 LCE3DQ9BYE3 92 aa4.01□□□□□ -1.77
SHMT2-226ENST00000556825 SYNE1Q8NF91 8797 aaKnown RBP3.96□□□□□ -1.78
SHMT2-226ENST00000556825 LCE3BQ5TA77 95 aa3.95□□□□□ -1.78
SHMT2-226ENST00000556825 KRTAP4-3Q9BYR4 195 aa3.94□□□□□ -1.78
SHMT2-226ENST00000556825 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
SHMT2-226ENST00000556825 KRTAP19-3Q7Z4W3 81 aa3.88□□□□□ -1.79
SHMT2-226ENST00000556825 MDN1Q9NU22 5596 aa3.88□□□□□ -1.79
SHMT2-226ENST00000556825 SPRR2FQ96RM1 72 aa3.87□□□□□ -1.79
SHMT2-226ENST00000556825 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
SHMT2-226ENST00000556825 MT1MQ8N339 61 aa3.83□□□□□ -1.8
SHMT2-226ENST00000556825 SPRR2EP22531 72 aa3.83□□□□□ -1.8
SHMT2-226ENST00000556825 SPRR2BP35325 72 aa3.83□□□□□ -1.8
SHMT2-226ENST00000556825 SPRR2AP35326 72 aa3.83□□□□□ -1.8
SHMT2-226ENST00000556825 LCE5AQ5TCM9 118 aa3.78□□□□□ -1.8
SHMT2-226ENST00000556825 SPRR2DP22532 72 aa3.72□□□□□ -1.81
SHMT2-226ENST00000556825 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
SHMT2-226ENST00000556825 DSTQ03001 7570 aaKnown RBP3.67□□□□□ -1.82
SHMT2-226ENST00000556825 KRTAP6-1Q3LI64 71 aa3.61□□□□□ -1.83
SHMT2-226ENST00000556825 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
SHMT2-226ENST00000556825 KRTAP5-10Q6L8G5 202 aa3.45□□□□□ -1.86
SHMT2-226ENST00000556825 KRTAP5-7Q6L8G8 165 aa3.44□□□□□ -1.86
SHMT2-226ENST00000556825 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
SHMT2-226ENST00000556825 HMCN1Q96RW7 5635 aa3.35□□□□□ -1.87
SHMT2-226ENST00000556825 LCE4AQ5TA78 99 aa3.35□□□□□ -1.87
SHMT2-226ENST00000556825 KRTAP9-4Q9BYQ2 154 aa3.27□□□□□ -1.89
SHMT2-226ENST00000556825 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
SHMT2-226ENST00000556825 MT4P47944 62 aa3.23□□□□□ -1.89
SHMT2-226ENST00000556825 KRTAP5-4Q6L8H1 288 aa3.16□□□□□ -1.9
SHMT2-226ENST00000556825 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
SHMT2-226ENST00000556825 KRTAP4-11Q9BYQ6 195 aa3.13□□□□□ -1.91
SHMT2-226ENST00000556825 MT3P25713 68 aa3.12□□□□□ -1.91
SHMT2-226ENST00000556825 KRTAP4-6Q9BYQ5 205 aa3.08□□□□□ -1.92
SHMT2-226ENST00000556825 AHNAKQ09666 5890 aaKnown RBP3.07□□□□□ -1.92
SHMT2-226ENST00000556825 KRTAP20-2Q3LI61 65 aa2.97□□□□□ -1.93
SHMT2-226ENST00000556825 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
SHMT2-226ENST00000556825 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
SHMT2-226ENST00000556825 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
SHMT2-226ENST00000556825 KRTAP21-1Q3LI58 79 aa2.83□□□□□ -1.96
SHMT2-226ENST00000556825 LCE1CQ5T751 118 aa2.82□□□□□ -1.96
SHMT2-226ENST00000556825 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
SHMT2-226ENST00000556825 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
SHMT2-226ENST00000556825 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
SHMT2-226ENST00000556825 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
SHMT2-226ENST00000556825 KRTAP4-12Q9BQ66 201 aa2.61□□□□□ -1.99
SHMT2-226ENST00000556825 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
SHMT2-226ENST00000556825 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
SHMT2-226ENST00000556825 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.29□□□□□ -2.04
SHMT2-226ENST00000556825 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SHMT2-226ENST00000556825 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
SHMT2-226ENST00000556825 PHGR1C9JFL3 82 aa2.02□□□□□ -2.09
SHMT2-226ENST00000556825 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 128.6 ms