RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 HMCN1Q96RW7 5635 aa3.87□□□□□ -1.79
SCFD1-220ENST00000556486 MT4P47944 62 aa3.86□□□□□ -1.79
SCFD1-220ENST00000556486 AHNAK2Q8IVF2 5795 aa3.84□□□□□ -1.79
SCFD1-220ENST00000556486 SMIM20Q8N5G0 67 aa3.83□□□□□ -1.8
SCFD1-220ENST00000556486 MT-ATP8P03928 68 aa3.81□□□□□ -1.8
SCFD1-220ENST00000556486 KRTAP5-10Q6L8G5 202 aa3.81□□□□□ -1.8
SCFD1-220ENST00000556486 ACYP2P14621 99 aa3.8□□□□□ -1.8
SCFD1-220ENST00000556486 KRTAP5-4Q6L8H1 288 aa3.8□□□□□ -1.8
SCFD1-220ENST00000556486 SPRR5A0A1B0GTR4 108 aa3.79□□□□□ -1.8
SCFD1-220ENST00000556486 SPTSSBQ8NFR3 76 aa3.79□□□□□ -1.8
SCFD1-220ENST00000556486 KRTAP4-4Q9BYR3 166 aa3.79□□□□□ -1.8
SCFD1-220ENST00000556486 SCGB1A1P11684 91 aa3.76□□□□□ -1.81
SCFD1-220ENST00000556486 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
SCFD1-220ENST00000556486 MT1EP04732 61 aa3.73□□□□□ -1.81
SCFD1-220ENST00000556486 KRTAP19-3Q7Z4W3 81 aa3.73□□□□□ -1.81
SCFD1-220ENST00000556486 CYSTM1Q9H1C7 97 aa3.71□□□□□ -1.82
SCFD1-220ENST00000556486 J3QR89 54 aa3.7□□□□□ -1.82
SCFD1-220ENST00000556486 KRTAP13-4Q3LI77 160 aa3.7□□□□□ -1.82
SCFD1-220ENST00000556486 CHKB-CPT1BH3BT56 60 aa3.69□□□□□ -1.82
SCFD1-220ENST00000556486 KRTAP5-7Q6L8G8 165 aa3.68□□□□□ -1.82
SCFD1-220ENST00000556486 KTN1-AS1Q86SY8 53 aa3.65□□□□□ -1.83
SCFD1-220ENST00000556486 A0A1B0GV90 55 aa3.64□□□□□ -1.83
SCFD1-220ENST00000556486 MT1GP13640 62 aa3.63□□□□□ -1.83
SCFD1-220ENST00000556486 PP632Q6XCG6 107 aa3.59□□□□□ -1.83
SCFD1-220ENST00000556486 KRTAP4-3Q9BYR4 195 aa3.59□□□□□ -1.83
SCFD1-220ENST00000556486 A0A0D9SG42 100 aa3.58□□□□□ -1.84
SCFD1-220ENST00000556486 TMEM258P61165 79 aa3.58□□□□□ -1.84
SCFD1-220ENST00000556486 KRTAP19-5Q3LI72 72 aa3.58□□□□□ -1.84
SCFD1-220ENST00000556486 MT1MQ8N339 61 aa3.56□□□□□ -1.84
SCFD1-220ENST00000556486 SNURFQ9Y675 71 aa3.56□□□□□ -1.84
SCFD1-220ENST00000556486 MT1LQ93083 61 aa3.52□□□□□ -1.85
SCFD1-220ENST00000556486 KRTAP12-1P59990 96 aa3.5□□□□□ -1.85
SCFD1-220ENST00000556486 COA5Q86WW8 74 aa3.49□□□□□ -1.85
SCFD1-220ENST00000556486 SPATA8Q6RVD6 105 aa3.48□□□□□ -1.85
SCFD1-220ENST00000556486 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
SCFD1-220ENST00000556486 SERP1Q9Y6X1 66 aa3.48□□□□□ -1.85
SCFD1-220ENST00000556486 K7ERU9 68 aa3.47□□□□□ -1.85
SCFD1-220ENST00000556486 SERP2Q8N6R1 65 aa3.47□□□□□ -1.85
SCFD1-220ENST00000556486 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
SCFD1-220ENST00000556486 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
SCFD1-220ENST00000556486 OBSCNQ5VST9 7968 aa3.42□□□□□ -1.86
SCFD1-220ENST00000556486 C10orf95Q9H7T3 257 aa3.42□□□□□ -1.86
SCFD1-220ENST00000556486 TNP1P09430 55 aa3.38□□□□□ -1.87
SCFD1-220ENST00000556486 RPS28P62857 69 aaKnown RBP3.33□□□□□ -1.88
SCFD1-220ENST00000556486 H7BZZ5 65 aa3.32□□□□□ -1.88
SCFD1-220ENST00000556486 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-220ENST00000556486 A0A1B0GU69 56 aa3.31□□□□□ -1.88
SCFD1-220ENST00000556486 COX7CP15954 63 aa3.3□□□□□ -1.88
SCFD1-220ENST00000556486 Q1T7F1 81 aa3.3□□□□□ -1.88
SCFD1-220ENST00000556486 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
SCFD1-220ENST00000556486 KRTAP12-4P60329 112 aa3.27□□□□□ -1.89
SCFD1-220ENST00000556486 ROMO1P60602 79 aa3.25□□□□□ -1.89
SCFD1-220ENST00000556486 AHNAKQ09666 5890 aaKnown RBP3.25□□□□□ -1.89
SCFD1-220ENST00000556486 MUC5ACP98088 5654 aa3.24□□□□□ -1.89
SCFD1-220ENST00000556486 SYNE1Q8NF91 8797 aaKnown RBP3.23□□□□□ -1.89
SCFD1-220ENST00000556486 MUC5BQ9HC84 5762 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-220ENST00000556486 KRTAP5-8O75690 187 aa3.18□□□□□ -1.9
SCFD1-220ENST00000556486 BRK1Q8WUW1 75 aa3.17□□□□□ -1.9
SCFD1-220ENST00000556486 PRR15LQ9BU68 103 aa3.16□□□□□ -1.9
SCFD1-220ENST00000556486 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
SCFD1-220ENST00000556486 LINC01558Q9Y6Z2 57 aa3.11□□□□□ -1.91
SCFD1-220ENST00000556486 ATP5EP56381 51 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-220ENST00000556486 UQCR11O14957 56 aa3.07□□□□□ -1.92
SCFD1-220ENST00000556486 MT1AP04731 61 aa3□□□□□ -1.93
SCFD1-220ENST00000556486 LCE1CQ5T751 118 aa3□□□□□ -1.93
SCFD1-220ENST00000556486 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
SCFD1-220ENST00000556486 CCDC179H3BU77 68 aa2.99□□□□□ -1.93
SCFD1-220ENST00000556486 KRTAP6-1Q3LI64 71 aa2.99□□□□□ -1.93
SCFD1-220ENST00000556486 MIR22HGQ0VDD5 57 aa2.96□□□□□ -1.94
SCFD1-220ENST00000556486 CDC42SE1Q9NRR8 79 aa2.96□□□□□ -1.94
SCFD1-220ENST00000556486 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
SCFD1-220ENST00000556486 INE1O15225 51 aa2.87□□□□□ -1.95
SCFD1-220ENST00000556486 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
SCFD1-220ENST00000556486 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
SCFD1-220ENST00000556486 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
SCFD1-220ENST00000556486 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
SCFD1-220ENST00000556486 PRM1P04553 51 aa1.35□□□□□ -2.19
SCFD1-220ENST00000556486 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 36.5 ms