RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 KRTAP2-3P0C7H8 128 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 KRTAP2-4Q9BYR9 128 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 KRTAP2-1Q9BYU5 128 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 FAT2Q9NYQ8 4349 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 LRP1BQ9NZR2 4599 aa0.82□□□□□ -2.28
LINC00643-204ENST00000555934 COL6A5A8TX70 2615 aa0.82□□□□□ -2.28
LINC00643-204ENST00000555934 TNXBP22105 4242 aa0.81□□□□□ -2.28
LINC00643-204ENST00000555934 TGP01266 2768 aa0.81□□□□□ -2.28
LINC00643-204ENST00000555934 SRRM2Q9UQ35 2752 aaKnown RBP0.81□□□□□ -2.28
LINC00643-204ENST00000555934 MT1HL1P0DM35 61 aa0.8□□□□□ -2.28
LINC00643-204ENST00000555934 ABCA13Q86UQ4 5058 aa0.8□□□□□ -2.28
LINC00643-204ENST00000555934 GPR98Q8WXG9 6306 aa0.8□□□□□ -2.28
LINC00643-204ENST00000555934 RYR2Q92736 4967 aa0.79□□□□□ -2.28
LINC00643-204ENST00000555934 COL7A1Q02388 2944 aa0.79□□□□□ -2.28
LINC00643-204ENST00000555934 APOBP04114 4563 aaKnown RBP0.79□□□□□ -2.28
LINC00643-204ENST00000555934 DMBT1Q9UGM3 2413 aaPredicted RBP0.79□□□□□ -2.28
LINC00643-204ENST00000555934 HERC2O95714 4834 aa0.78□□□□□ -2.28
LINC00643-204ENST00000555934 SMR3BP02814 79 aaPredicted RBP0.78□□□□□ -2.28
LINC00643-204ENST00000555934 PKD1P98161 4303 aa0.77□□□□□ -2.29
LINC00643-204ENST00000555934 LRP1Q07954 4544 aaKnown RBP0.77□□□□□ -2.29
LINC00643-204ENST00000555934 PRM1P04553 51 aa0.77□□□□□ -2.29
LINC00643-204ENST00000555934 TNP1P09430 55 aa0.77□□□□□ -2.29
LINC00643-204ENST00000555934 FAT4Q6V0I7 4981 aa0.77□□□□□ -2.29
LINC00643-204ENST00000555934 DYNC1H1Q14204 4646 aaKnown RBP0.77□□□□□ -2.29
LINC00643-204ENST00000555934 FAT1Q14517 4588 aa0.76□□□□□ -2.29
LINC00643-204ENST00000555934 KRTAP19-2Q3LHN2 52 aa0.76□□□□□ -2.29
LINC00643-204ENST00000555934 HERC1Q15751 4861 aa0.75□□□□□ -2.29
LINC00643-204ENST00000555934 HSPG2P98160 4391 aa0.75□□□□□ -2.29
LINC00643-204ENST00000555934 FAT3Q8TDW7 4589 aa0.75□□□□□ -2.29
LINC00643-204ENST00000555934 MUC5BQ9HC84 5762 aaPredicted RBP0.75□□□□□ -2.29
LINC00643-204ENST00000555934 SPRR2GQ9BYE4 73 aa0.74□□□□□ -2.29
LINC00643-204ENST00000555934 KRTAP8-1Q8IUC2 63 aa0.73□□□□□ -2.29
LINC00643-204ENST00000555934 AHNAKQ09666 5890 aaKnown RBP0.73□□□□□ -2.29
LINC00643-204ENST00000555934 MYCBP2O75592 4640 aa0.73□□□□□ -2.29
LINC00643-204ENST00000555934 SSPOA2VEC9 5147 aa0.72□□□□□ -2.29
LINC00643-204ENST00000555934 KRTAP19-8Q3LI54 63 aa0.71□□□□□ -2.3
LINC00643-204ENST00000555934 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
LINC00643-204ENST00000555934 LPAP08519 4548 aa0.7□□□□□ -2.3
LINC00643-204ENST00000555934 NEBP20929 6669 aa0.7□□□□□ -2.3
LINC00643-204ENST00000555934 LRP2P98164 4655 aa0.69□□□□□ -2.3
LINC00643-204ENST00000555934 MUC17Q685J3 4493 aa0.69□□□□□ -2.3
LINC00643-204ENST00000555934 FSIP2Q5CZC0 6907 aa0.68□□□□□ -2.3
LINC00643-204ENST00000555934 FLGP20930 4061 aaPredicted RBP0.67□□□□□ -2.3
LINC00643-204ENST00000555934 MT1BP07438 61 aa0.66□□□□□ -2.3
LINC00643-204ENST00000555934 MT1HP80294 61 aa0.66□□□□□ -2.3
LINC00643-204ENST00000555934 MT1XP80297 61 aa0.66□□□□□ -2.3
LINC00643-204ENST00000555934 SYNE2Q8WXH0 6885 aaKnown RBP0.65□□□□□ -2.31
LINC00643-204ENST00000555934 MT2AP02795 61 aa0.65□□□□□ -2.31
LINC00643-204ENST00000555934 MT1FP04733 61 aa0.65□□□□□ -2.31
LINC00643-204ENST00000555934 RNF213Q63HN8 5207 aa0.64□□□□□ -2.31
LINC00643-204ENST00000555934 MACF1Q9UPN3 7388 aaKnown RBP0.64□□□□□ -2.31
LINC00643-204ENST00000555934 HMCN2Q8NDA2 5059 aa0.64□□□□□ -2.31
LINC00643-204ENST00000555934 SPRR2DP22532 72 aa0.63□□□□□ -2.31
LINC00643-204ENST00000555934 KRTAP19-5Q3LI72 72 aa0.61□□□□□ -2.31
LINC00643-204ENST00000555934 KMT2DO14686 5537 aa0.6□□□□□ -2.31
LINC00643-204ENST00000555934 PHGR1C9JFL3 82 aa0.6□□□□□ -2.31
LINC00643-204ENST00000555934 MT1EP04732 61 aa0.59□□□□□ -2.31
LINC00643-204ENST00000555934 SPRR2BP35325 72 aa0.59□□□□□ -2.31
LINC00643-204ENST00000555934 KRTAP19-7Q3SYF9 63 aa0.59□□□□□ -2.31
LINC00643-204ENST00000555934 MT1LQ93083 61 aa0.58□□□□□ -2.32
LINC00643-204ENST00000555934 MUC5ACP98088 5654 aa0.57□□□□□ -2.32
LINC00643-204ENST00000555934 MUC12Q9UKN1 5478 aa0.57□□□□□ -2.32
LINC00643-204ENST00000555934 MDN1Q9NU22 5596 aa0.56□□□□□ -2.32
LINC00643-204ENST00000555934 USH2AO75445 5202 aa0.56□□□□□ -2.32
LINC00643-204ENST00000555934 MT1AP04731 61 aa0.55□□□□□ -2.32
LINC00643-204ENST00000555934 MT1GP13640 62 aa0.55□□□□□ -2.32
LINC00643-204ENST00000555934 KRTAP19-6Q3LI70 58 aa0.55□□□□□ -2.32
LINC00643-204ENST00000555934 KRTAP20-1Q3LI63 56 aa0.54□□□□□ -2.32
LINC00643-204ENST00000555934 DSTQ03001 7570 aaKnown RBP0.54□□□□□ -2.32
LINC00643-204ENST00000555934 KRTAP6-2Q3LI66 62 aa0.53□□□□□ -2.32
LINC00643-204ENST00000555934 MT1MQ8N339 61 aa0.53□□□□□ -2.32
LINC00643-204ENST00000555934 SPRR2AP35326 72 aa0.52□□□□□ -2.33
LINC00643-204ENST00000555934 SPRR2FQ96RM1 72 aa0.5□□□□□ -2.33
LINC00643-204ENST00000555934 KRTAP6-1Q3LI64 71 aa0.47□□□□□ -2.33
LINC00643-204ENST00000555934 SYNE1Q8NF91 8797 aaKnown RBP0.47□□□□□ -2.33
LINC00643-204ENST00000555934 SPRR2EP22531 72 aa0.46□□□□□ -2.34
LINC00643-204ENST00000555934 KRTAP20-2Q3LI61 65 aa0.37□□□□□ -2.35
LINC00643-204ENST00000555934 MT4P47944 62 aa0.29□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 55.2 ms