RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 MIR22HGQ0VDD5 57 aa2.76□□□□□ -1.97
LINC00643-203ENST00000555518 KRTAP19-8Q3LI54 63 aa2.75□□□□□ -1.97
LINC00643-203ENST00000555518 CDC42SE1Q9NRR8 79 aa2.75□□□□□ -1.97
LINC00643-203ENST00000555518 A0A0D9SG42 100 aa2.73□□□□□ -1.97
LINC00643-203ENST00000555518 MT1BP07438 61 aa2.73□□□□□ -1.97
LINC00643-203ENST00000555518 CAMK2N1Q7Z7J9 78 aa2.73□□□□□ -1.97
LINC00643-203ENST00000555518 SSPOA2VEC9 5147 aa2.72□□□□□ -1.97
LINC00643-203ENST00000555518 A6NN06 94 aa2.72□□□□□ -1.97
LINC00643-203ENST00000555518 KRTAP12-1P59990 96 aa2.72□□□□□ -1.97
LINC00643-203ENST00000555518 LINC01554Q52M75 96 aa2.71□□□□□ -1.98
LINC00643-203ENST00000555518 BRK1Q8WUW1 75 aa2.7□□□□□ -1.98
LINC00643-203ENST00000555518 SPINT4Q6UDR6 99 aa2.66□□□□□ -1.98
LINC00643-203ENST00000555518 LCE3DQ9BYE3 92 aa2.66□□□□□ -1.98
LINC00643-203ENST00000555518 PRO0628Q9UI54 55 aa2.63□□□□□ -1.99
LINC00643-203ENST00000555518 MT1XP80297 61 aa2.62□□□□□ -1.99
LINC00643-203ENST00000555518 PLAC4Q8WY50 150 aa2.62□□□□□ -1.99
LINC00643-203ENST00000555518 MUC19Q7Z5P9 8384 aa2.6□□□□□ -1.99
LINC00643-203ENST00000555518 FCGBPQ9Y6R7 5405 aaPredicted RBP2.59□□□□□ -1.99
LINC00643-203ENST00000555518 K7ERS5 55 aa2.59□□□□□ -1.99
LINC00643-203ENST00000555518 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -1.99
LINC00643-203ENST00000555518 C10orf95Q9H7T3 257 aa2.59□□□□□ -1.99
LINC00643-203ENST00000555518 KRTAP19-6Q3LI70 58 aa2.58□□□□□ -2
LINC00643-203ENST00000555518 FSIP2Q5CZC0 6907 aa2.56□□□□□ -2
LINC00643-203ENST00000555518 PMAIP1Q13794 54 aa2.55□□□□□ -2
LINC00643-203ENST00000555518 ROMO1P60602 79 aa2.53□□□□□ -2
LINC00643-203ENST00000555518 PRO2289Q9P1D8 64 aa2.51□□□□□ -2.01
LINC00643-203ENST00000555518 KMT2DO14686 5537 aa2.49□□□□□ -2.01
LINC00643-203ENST00000555518 CRCT1Q9UGL9 99 aa2.49□□□□□ -2.01
LINC00643-203ENST00000555518 KRTAP25-1Q3LHN0 102 aa2.47□□□□□ -2.01
LINC00643-203ENST00000555518 TNP1P09430 55 aa2.46□□□□□ -2.02
LINC00643-203ENST00000555518 KTN1-AS1Q86SY8 53 aa2.45□□□□□ -2.02
LINC00643-203ENST00000555518 SPRR5A0A1B0GTR4 108 aa2.39□□□□□ -2.03
LINC00643-203ENST00000555518 KRTAP8-1Q8IUC2 63 aa2.37□□□□□ -2.03
LINC00643-203ENST00000555518 KRTAP19-7Q3SYF9 63 aa2.35□□□□□ -2.03
LINC00643-203ENST00000555518 MACF1Q9UPN3 7388 aaKnown RBP2.35□□□□□ -2.03
LINC00643-203ENST00000555518 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
LINC00643-203ENST00000555518 MUC12Q9UKN1 5478 aa2.33□□□□□ -2.04
LINC00643-203ENST00000555518 SYNE2Q8WXH0 6885 aaKnown RBP2.31□□□□□ -2.04
LINC00643-203ENST00000555518 MDN1Q9NU22 5596 aa2.31□□□□□ -2.04
LINC00643-203ENST00000555518 KRTAP12-3P60328 96 aa2.31□□□□□ -2.04
LINC00643-203ENST00000555518 MT1EP04732 61 aa2.3□□□□□ -2.04
LINC00643-203ENST00000555518 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
LINC00643-203ENST00000555518 LUZP6Q538Z0 58 aa2.27□□□□□ -2.05
LINC00643-203ENST00000555518 KRTAP6-3Q3LI67 103 aa2.25□□□□□ -2.05
LINC00643-203ENST00000555518 MT1LQ93083 61 aa2.25□□□□□ -2.05
LINC00643-203ENST00000555518 SPRR2FQ96RM1 72 aa2.25□□□□□ -2.05
LINC00643-203ENST00000555518 KRTAP19-3Q7Z4W3 81 aa2.2□□□□□ -2.06
LINC00643-203ENST00000555518 NEBP20929 6669 aa2.18□□□□□ -2.06
LINC00643-203ENST00000555518 MT1GP13640 62 aa2.16□□□□□ -2.06
LINC00643-203ENST00000555518 MT1MQ8N339 61 aa2.16□□□□□ -2.06
LINC00643-203ENST00000555518 SPRR2EP22531 72 aa2.15□□□□□ -2.07
LINC00643-203ENST00000555518 SPRR2BP35325 72 aa2.15□□□□□ -2.07
LINC00643-203ENST00000555518 SPRR2AP35326 72 aa2.15□□□□□ -2.07
LINC00643-203ENST00000555518 SPRR2DP22532 72 aa2.07□□□□□ -2.08
LINC00643-203ENST00000555518 DSTQ03001 7570 aaKnown RBP2.03□□□□□ -2.08
LINC00643-203ENST00000555518 KRTAP2-3P0C7H8 128 aa1.95□□□□□ -2.1
LINC00643-203ENST00000555518 KRTAP2-4Q9BYR9 128 aa1.95□□□□□ -2.1
LINC00643-203ENST00000555518 KRTAP20-1Q3LI63 56 aa1.93□□□□□ -2.1
LINC00643-203ENST00000555518 MT1AP04731 61 aa1.91□□□□□ -2.1
LINC00643-203ENST00000555518 KRTAP2-1Q9BYU5 128 aa1.91□□□□□ -2.1
LINC00643-203ENST00000555518 SYNE1Q8NF91 8797 aaKnown RBP1.89□□□□□ -2.11
LINC00643-203ENST00000555518 KRTAP6-1Q3LI64 71 aa1.89□□□□□ -2.11
LINC00643-203ENST00000555518 KRTAP12-4P60329 112 aa1.88□□□□□ -2.11
LINC00643-203ENST00000555518 HMCN1Q96RW7 5635 aa1.85□□□□□ -2.11
LINC00643-203ENST00000555518 MT4P47944 62 aa1.79□□□□□ -2.12
LINC00643-203ENST00000555518 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
LINC00643-203ENST00000555518 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
LINC00643-203ENST00000555518 AHNAK2Q8IVF2 5795 aa1.7□□□□□ -2.14
LINC00643-203ENST00000555518 GPR98Q8WXG9 6306 aa1.57□□□□□ -2.16
LINC00643-203ENST00000555518 KRTAP5-10Q6L8G5 202 aa1.55□□□□□ -2.16
LINC00643-203ENST00000555518 MUC5ACP98088 5654 aa1.53□□□□□ -2.16
LINC00643-203ENST00000555518 INE1O15225 51 aa1.53□□□□□ -2.16
LINC00643-203ENST00000555518 MUC5BQ9HC84 5762 aaPredicted RBP1.41□□□□□ -2.18
LINC00643-203ENST00000555518 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.19
LINC00643-203ENST00000555518 PRM1P04553 51 aa1.32□□□□□ -2.2
LINC00643-203ENST00000555518 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
LINC00643-203ENST00000555518 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
LINC00643-203ENST00000555518 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 89.6 ms