RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
SYNE3-203ENST00000554873 KRTAP9-6A0A140TA67 174 aa5.15□□□□□ -1.58
SYNE3-203ENST00000554873 SSPOA2VEC9 5147 aa5.11□□□□□ -1.59
SYNE3-203ENST00000554873 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.6
SYNE3-203ENST00000554873 LOC100996750A0A140TA64 210 aa4.98□□□□□ -1.61
SYNE3-203ENST00000554873 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
SYNE3-203ENST00000554873 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.61
SYNE3-203ENST00000554873 MT1GP13640 62 aa4.91□□□□□ -1.62
SYNE3-203ENST00000554873 FCGBPQ9Y6R7 5405 aaPredicted RBP4.88□□□□□ -1.63
SYNE3-203ENST00000554873 MUC12Q9UKN1 5478 aa4.86□□□□□ -1.63
SYNE3-203ENST00000554873 MT1MQ8N339 61 aa4.85□□□□□ -1.63
SYNE3-203ENST00000554873 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
SYNE3-203ENST00000554873 DSTQ03001 7570 aaKnown RBP4.76□□□□□ -1.65
SYNE3-203ENST00000554873 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.74□□□□□ -1.65
SYNE3-203ENST00000554873 MACF1Q9UPN3 7388 aaKnown RBP4.72□□□□□ -1.65
SYNE3-203ENST00000554873 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
SYNE3-203ENST00000554873 PRM1P04553 51 aa4.65□□□□□ -1.66
SYNE3-203ENST00000554873 KRTAP9-7A8MTY7 169 aa4.64□□□□□ -1.67
SYNE3-203ENST00000554873 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
SYNE3-203ENST00000554873 MT1AP04731 61 aa4.61□□□□□ -1.67
SYNE3-203ENST00000554873 KRTAP6-3Q3LI67 103 aa4.61□□□□□ -1.67
SYNE3-203ENST00000554873 KRTAP4-9Q9BYQ8 210 aa4.6□□□□□ -1.67
SYNE3-203ENST00000554873 SPRR2FQ96RM1 72 aa4.59□□□□□ -1.68
SYNE3-203ENST00000554873 LCE3BQ5TA77 95 aa4.58□□□□□ -1.68
SYNE3-203ENST00000554873 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
SYNE3-203ENST00000554873 KRTAP2-2Q9BYT5 123 aa4.55□□□□□ -1.68
SYNE3-203ENST00000554873 LCE3EQ5T5B0 92 aa4.54□□□□□ -1.68
SYNE3-203ENST00000554873 LCE3DQ9BYE3 92 aa4.53□□□□□ -1.68
SYNE3-203ENST00000554873 MDN1Q9NU22 5596 aa4.49□□□□□ -1.69
SYNE3-203ENST00000554873 LCE1AQ5T7P2 110 aa4.46□□□□□ -1.69
SYNE3-203ENST00000554873 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
SYNE3-203ENST00000554873 SYNE1Q8NF91 8797 aaKnown RBP4.45□□□□□ -1.7
SYNE3-203ENST00000554873 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
SYNE3-203ENST00000554873 KRTAP5-9P26371 169 aa4.31□□□□□ -1.72
SYNE3-203ENST00000554873 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
SYNE3-203ENST00000554873 NEBP20929 6669 aa4.27□□□□□ -1.73
SYNE3-203ENST00000554873 SPRR2EP22531 72 aa4.16□□□□□ -1.74
SYNE3-203ENST00000554873 SPRR2BP35325 72 aa4.16□□□□□ -1.74
SYNE3-203ENST00000554873 SPRR2AP35326 72 aa4.16□□□□□ -1.74
SYNE3-203ENST00000554873 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
SYNE3-203ENST00000554873 KRTAP9-4Q9BYQ2 154 aa4.11□□□□□ -1.75
SYNE3-203ENST00000554873 KRTAP20-1Q3LI63 56 aa4.08□□□□□ -1.76
SYNE3-203ENST00000554873 SPRR2DP22532 72 aa3.99□□□□□ -1.77
SYNE3-203ENST00000554873 LCE1DQ5T752 114 aa3.98□□□□□ -1.77
SYNE3-203ENST00000554873 MT3P25713 68 aa3.92□□□□□ -1.78
SYNE3-203ENST00000554873 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
SYNE3-203ENST00000554873 MT4P47944 62 aa3.57□□□□□ -1.84
SYNE3-203ENST00000554873 KRTAP4-6Q9BYQ5 205 aa3.57□□□□□ -1.84
SYNE3-203ENST00000554873 LCE4AQ5TA78 99 aa3.53□□□□□ -1.84
SYNE3-203ENST00000554873 HMCN1Q96RW7 5635 aa3.48□□□□□ -1.85
SYNE3-203ENST00000554873 KRTAP5-2Q701N4 177 aa3.45□□□□□ -1.86
SYNE3-203ENST00000554873 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
SYNE3-203ENST00000554873 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
SYNE3-203ENST00000554873 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
SYNE3-203ENST00000554873 GPR98Q8WXG9 6306 aa3.37□□□□□ -1.87
SYNE3-203ENST00000554873 MUC5ACP98088 5654 aa3.36□□□□□ -1.87
SYNE3-203ENST00000554873 AHNAK2Q8IVF2 5795 aa3.31□□□□□ -1.88
SYNE3-203ENST00000554873 KRTAP5-3Q6L8H2 238 aa3.28□□□□□ -1.88
SYNE3-203ENST00000554873 KRTAP5-10Q6L8G5 202 aa3.23□□□□□ -1.89
SYNE3-203ENST00000554873 LCE1BQ5T7P3 118 aa3.16□□□□□ -1.9
SYNE3-203ENST00000554873 KRTAP5-1Q6L8H4 278 aa3.1□□□□□ -1.91
SYNE3-203ENST00000554873 KRTAP5-7Q6L8G8 165 aa3.06□□□□□ -1.92
SYNE3-203ENST00000554873 KRTAP21-1Q3LI58 79 aa3.02□□□□□ -1.93
SYNE3-203ENST00000554873 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
SYNE3-203ENST00000554873 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
SYNE3-203ENST00000554873 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
SYNE3-203ENST00000554873 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
SYNE3-203ENST00000554873 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
SYNE3-203ENST00000554873 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
SYNE3-203ENST00000554873 KRTAP9-9Q9BYP9 154 aa2.8□□□□□ -1.96
SYNE3-203ENST00000554873 MUC5BQ9HC84 5762 aaPredicted RBP2.79□□□□□ -1.96
SYNE3-203ENST00000554873 KRTAP4-12Q9BQ66 201 aa2.77□□□□□ -1.97
SYNE3-203ENST00000554873 AHNAKQ09666 5890 aaKnown RBP2.69□□□□□ -1.98
SYNE3-203ENST00000554873 KRTAP4-4Q9BYR3 166 aa2.65□□□□□ -1.99
SYNE3-203ENST00000554873 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
SYNE3-203ENST00000554873 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
SYNE3-203ENST00000554873 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 100.4 ms