RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 MT1EP04732 61 aa5.05□□□□□ -1.6
ACTN1-211ENST00000553882 MT1LQ93083 61 aa5.05□□□□□ -1.6
ACTN1-211ENST00000553882 FCGBPQ9Y6R7 5405 aaPredicted RBP4.97□□□□□ -1.61
ACTN1-211ENST00000553882 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.62
ACTN1-211ENST00000553882 MUC12Q9UKN1 5478 aa4.95□□□□□ -1.62
ACTN1-211ENST00000553882 KRTAP2-3P0C7H8 128 aa4.9□□□□□ -1.62
ACTN1-211ENST00000553882 LCE3BQ5TA77 95 aa4.9□□□□□ -1.62
ACTN1-211ENST00000553882 KRTAP2-4Q9BYR9 128 aa4.9□□□□□ -1.62
ACTN1-211ENST00000553882 KRTAP2-1Q9BYU5 128 aa4.9□□□□□ -1.62
ACTN1-211ENST00000553882 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
ACTN1-211ENST00000553882 KRTAP4-3Q9BYR4 195 aa4.86□□□□□ -1.63
ACTN1-211ENST00000553882 KRTAP9-9Q9BYP9 154 aa4.83□□□□□ -1.64
ACTN1-211ENST00000553882 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
ACTN1-211ENST00000553882 KRTAP5-3Q6L8H2 238 aa4.81□□□□□ -1.64
ACTN1-211ENST00000553882 DSTQ03001 7570 aaKnown RBP4.81□□□□□ -1.64
ACTN1-211ENST00000553882 MT1GP13640 62 aa4.77□□□□□ -1.65
ACTN1-211ENST00000553882 CRCT1Q9UGL9 99 aa4.73□□□□□ -1.65
ACTN1-211ENST00000553882 KRTAP19-3Q7Z4W3 81 aa4.73□□□□□ -1.65
ACTN1-211ENST00000553882 MT1MQ8N339 61 aa4.72□□□□□ -1.65
ACTN1-211ENST00000553882 KRTAP4-12Q9BQ66 201 aa4.68□□□□□ -1.66
ACTN1-211ENST00000553882 KRTAP4-2Q9BYR5 136 aa4.67□□□□□ -1.66
ACTN1-211ENST00000553882 LCE1DQ5T752 114 aa4.65□□□□□ -1.67
ACTN1-211ENST00000553882 KRTAP4-9Q9BYQ8 210 aa4.65□□□□□ -1.67
ACTN1-211ENST00000553882 MACF1Q9UPN3 7388 aaKnown RBP4.64□□□□□ -1.67
ACTN1-211ENST00000553882 SPRR2FQ96RM1 72 aa4.63□□□□□ -1.67
ACTN1-211ENST00000553882 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
ACTN1-211ENST00000553882 KRTAP2-2Q9BYT5 123 aa4.54□□□□□ -1.68
ACTN1-211ENST00000553882 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
ACTN1-211ENST00000553882 SYNE2Q8WXH0 6885 aaKnown RBP4.5□□□□□ -1.69
ACTN1-211ENST00000553882 SYNE1Q8NF91 8797 aaKnown RBP4.45□□□□□ -1.7
ACTN1-211ENST00000553882 KRTAP12-4P60329 112 aa4.4□□□□□ -1.71
ACTN1-211ENST00000553882 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
ACTN1-211ENST00000553882 KRTAP4-11Q9BYQ6 195 aa4.29□□□□□ -1.72
ACTN1-211ENST00000553882 LCE1AQ5T7P2 110 aa4.27□□□□□ -1.73
ACTN1-211ENST00000553882 OBSCNQ5VST9 7968 aa4.27□□□□□ -1.73
ACTN1-211ENST00000553882 MT1AP04731 61 aa4.21□□□□□ -1.74
ACTN1-211ENST00000553882 KRTAP5-9P26371 169 aa4.21□□□□□ -1.74
ACTN1-211ENST00000553882 SPRR2EP22531 72 aa4.19□□□□□ -1.74
ACTN1-211ENST00000553882 SPRR2BP35325 72 aa4.19□□□□□ -1.74
ACTN1-211ENST00000553882 SPRR2AP35326 72 aa4.19□□□□□ -1.74
ACTN1-211ENST00000553882 LCE1EQ5T753 118 aa4.15□□□□□ -1.74
ACTN1-211ENST00000553882 KRTAP6-3Q3LI67 103 aa4.15□□□□□ -1.75
ACTN1-211ENST00000553882 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.75
ACTN1-211ENST00000553882 LCE1FQ5T754 118 aa4.12□□□□□ -1.75
ACTN1-211ENST00000553882 LCE3DQ9BYE3 92 aa4.11□□□□□ -1.75
ACTN1-211ENST00000553882 LCE3EQ5T5B0 92 aa4.04□□□□□ -1.76
ACTN1-211ENST00000553882 LCE4AQ5TA78 99 aa4.03□□□□□ -1.76
ACTN1-211ENST00000553882 SPRR2DP22532 72 aa4□□□□□ -1.77
ACTN1-211ENST00000553882 HMCN1Q96RW7 5635 aa3.98□□□□□ -1.77
ACTN1-211ENST00000553882 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
ACTN1-211ENST00000553882 PRM1P04553 51 aa3.89□□□□□ -1.79
ACTN1-211ENST00000553882 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
ACTN1-211ENST00000553882 MT3P25713 68 aa3.79□□□□□ -1.8
ACTN1-211ENST00000553882 KRTAP5-4Q6L8H1 288 aa3.63□□□□□ -1.83
ACTN1-211ENST00000553882 GPR98Q8WXG9 6306 aa3.62□□□□□ -1.83
ACTN1-211ENST00000553882 NEBP20929 6669 aa3.6□□□□□ -1.83
ACTN1-211ENST00000553882 MT4P47944 62 aa3.58□□□□□ -1.84
ACTN1-211ENST00000553882 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.51□□□□□ -1.85
ACTN1-211ENST00000553882 KRTAP20-2Q3LI61 65 aa3.46□□□□□ -1.86
ACTN1-211ENST00000553882 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
ACTN1-211ENST00000553882 MUC5ACP98088 5654 aa3.27□□□□□ -1.89
ACTN1-211ENST00000553882 MUC5BQ9HC84 5762 aaPredicted RBP3.26□□□□□ -1.89
ACTN1-211ENST00000553882 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
ACTN1-211ENST00000553882 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
ACTN1-211ENST00000553882 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
ACTN1-211ENST00000553882 KRTAP5-1Q6L8H4 278 aa2.94□□□□□ -1.94
ACTN1-211ENST00000553882 AHNAKQ09666 5890 aaKnown RBP2.91□□□□□ -1.94
ACTN1-211ENST00000553882 LCE1CQ5T751 118 aa2.91□□□□□ -1.94
ACTN1-211ENST00000553882 KRTAP5-11Q6L8G4 156 aa2.8□□□□□ -1.96
ACTN1-211ENST00000553882 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
ACTN1-211ENST00000553882 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
ACTN1-211ENST00000553882 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
ACTN1-211ENST00000553882 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
ACTN1-211ENST00000553882 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
ACTN1-211ENST00000553882 KRTAP5-7Q6L8G8 165 aa2.67□□□□□ -1.98
ACTN1-211ENST00000553882 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
ACTN1-211ENST00000553882 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
ACTN1-211ENST00000553882 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 121.7 ms