RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 MT1LQ93083 61 aa7.28□□□□□ -1.24
FOXA1-203ENST00000553751 PP632Q6XCG6 107 aa7.23□□□□□ -1.25
FOXA1-203ENST00000553751 MT1MQ8N339 61 aa7.21□□□□□ -1.26
FOXA1-203ENST00000553751 K7ERS5 55 aa7.17□□□□□ -1.26
FOXA1-203ENST00000553751 KRTAP25-1Q3LHN0 102 aa7.12□□□□□ -1.27
FOXA1-203ENST00000553751 KRTAP12-3P60328 96 aa7.11□□□□□ -1.27
FOXA1-203ENST00000553751 PCP4P48539 62 aa7.07□□□□□ -1.28
FOXA1-203ENST00000553751 A6NED7 52 aa7.06□□□□□ -1.28
FOXA1-203ENST00000553751 RPS28P62857 69 aaKnown RBP7.04□□□□□ -1.28
FOXA1-203ENST00000553751 KRTAP4-3Q9BYR4 195 aa7.04□□□□□ -1.28
FOXA1-203ENST00000553751 KRTAP4-9Q9BYQ8 210 aa6.97□□□□□ -1.29
FOXA1-203ENST00000553751 KRTAP4-7Q9BYR0 210 aa6.93□□□□□ -1.3
FOXA1-203ENST00000553751 KRTAP23-1A1A580 65 aa6.86□□□□□ -1.31
FOXA1-203ENST00000553751 LCE4AQ5TA78 99 aa6.86□□□□□ -1.31
FOXA1-203ENST00000553751 LCE1DQ5T752 114 aa6.84□□□□□ -1.31
FOXA1-203ENST00000553751 CDC42SE1Q9NRR8 79 aa6.83□□□□□ -1.32
FOXA1-203ENST00000553751 HMCN1Q96RW7 5635 aa6.8□□□□□ -1.32
FOXA1-203ENST00000553751 KRTAP5-4Q6L8H1 288 aa6.8□□□□□ -1.32
FOXA1-203ENST00000553751 MT4P47944 62 aa6.77□□□□□ -1.33
FOXA1-203ENST00000553751 ROMO1P60602 79 aa6.74□□□□□ -1.33
FOXA1-203ENST00000553751 GPR98Q8WXG9 6306 aa6.72□□□□□ -1.33
FOXA1-203ENST00000553751 KRTAP19-4Q3LI73 84 aa6.69□□□□□ -1.34
FOXA1-203ENST00000553751 KRTAP15-1Q3LI76 137 aa6.68□□□□□ -1.34
FOXA1-203ENST00000553751 KRTAP5-5Q701N2 237 aaPredicted RBP6.62□□□□□ -1.35
FOXA1-203ENST00000553751 KRTAP4-6Q9BYQ5 205 aa6.61□□□□□ -1.35
FOXA1-203ENST00000553751 LOC100996750A0A140TA64 210 aa6.56□□□□□ -1.36
FOXA1-203ENST00000553751 LCE3CQ5T5A8 94 aa6.56□□□□□ -1.36
FOXA1-203ENST00000553751 AHNAK2Q8IVF2 5795 aa6.49□□□□□ -1.37
FOXA1-203ENST00000553751 KRTAP20-2Q3LI61 65 aa6.4□□□□□ -1.38
FOXA1-203ENST00000553751 SPRR5A0A1B0GTR4 108 aa6.38□□□□□ -1.39
FOXA1-203ENST00000553751 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
FOXA1-203ENST00000553751 SYNE1Q8NF91 8797 aaKnown RBP6.3□□□□□ -1.4
FOXA1-203ENST00000553751 KRTAP5-10Q6L8G5 202 aa6.28□□□□□ -1.4
FOXA1-203ENST00000553751 KRTAP9-6A8MVA2 160 aa6.22□□□□□ -1.41
FOXA1-203ENST00000553751 KRTAP5-3Q6L8H2 238 aa6.21□□□□□ -1.42
FOXA1-203ENST00000553751 MT1AP04731 61 aa6.19□□□□□ -1.42
FOXA1-203ENST00000553751 BRK1Q8WUW1 75 aa6.19□□□□□ -1.42
FOXA1-203ENST00000553751 KRTAP6-1Q3LI64 71 aa6.15□□□□□ -1.42
FOXA1-203ENST00000553751 KRTAP5-7Q6L8G8 165 aa6.01□□□□□ -1.45
FOXA1-203ENST00000553751 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
FOXA1-203ENST00000553751 KRTAP9-4Q9BYQ2 154 aa5.95□□□□□ -1.46
FOXA1-203ENST00000553751 H3BS24 57 aa5.91□□□□□ -1.46
FOXA1-203ENST00000553751 KRTAP6-2Q3LI66 62 aa5.84□□□□□ -1.47
FOXA1-203ENST00000553751 PMAIP1Q13794 54 aa5.81□□□□□ -1.48
FOXA1-203ENST00000553751 KRTAP4-11Q9BYQ6 195 aa5.79□□□□□ -1.48
FOXA1-203ENST00000553751 MT3P25713 68 aa5.64□□□□□ -1.51
FOXA1-203ENST00000553751 PRAC1Q96KF2 57 aa5.62□□□□□ -1.51
FOXA1-203ENST00000553751 KRTAP4-12Q9BQ66 201 aa5.62□□□□□ -1.51
FOXA1-203ENST00000553751 KRTAP5-8O75690 187 aa5.61□□□□□ -1.51
FOXA1-203ENST00000553751 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
FOXA1-203ENST00000553751 PRO0628Q9UI54 55 aa5.48□□□□□ -1.53
FOXA1-203ENST00000553751 KRTAP9-9Q9BYP9 154 aa5.37□□□□□ -1.55
FOXA1-203ENST00000553751 MUC5BQ9HC84 5762 aaPredicted RBP5.35□□□□□ -1.55
FOXA1-203ENST00000553751 KRTAP5-1Q6L8H4 278 aa5.33□□□□□ -1.56
FOXA1-203ENST00000553751 AHNAKQ09666 5890 aaKnown RBP5.32□□□□□ -1.56
FOXA1-203ENST00000553751 MUC5ACP98088 5654 aa5.31□□□□□ -1.56
FOXA1-203ENST00000553751 KTN1-AS1Q86SY8 53 aa5.23□□□□□ -1.57
FOXA1-203ENST00000553751 LCE1EQ5T753 118 aa5.15□□□□□ -1.59
FOXA1-203ENST00000553751 SVIPQ8NHG7 77 aa4.99□□□□□ -1.61
FOXA1-203ENST00000553751 KRTAP4-2Q9BYR5 136 aa4.87□□□□□ -1.63
FOXA1-203ENST00000553751 LCE1BQ5T7P3 118 aa4.82□□□□□ -1.64
FOXA1-203ENST00000553751 LCE1CQ5T751 118 aa4.78□□□□□ -1.64
FOXA1-203ENST00000553751 LCE3DQ9BYE3 92 aa4.75□□□□□ -1.65
FOXA1-203ENST00000553751 LUZP6Q538Z0 58 aa4.67□□□□□ -1.66
FOXA1-203ENST00000553751 LCE3EQ5T5B0 92 aa4.49□□□□□ -1.69
FOXA1-203ENST00000553751 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.39□□□□□ -1.71
FOXA1-203ENST00000553751 KRTAP5-11Q6L8G4 156 aa4.33□□□□□ -1.72
FOXA1-203ENST00000553751 LCE1FQ5T754 118 aa4.15□□□□□ -1.75
FOXA1-203ENST00000553751 KRTAP21-2Q3LI59 83 aa4.06□□□□□ -1.76
FOXA1-203ENST00000553751 NDUFAF8A1L188 74 aa3.85□□□□□ -1.79
FOXA1-203ENST00000553751 A0A0A0MQY5 61 aa3.78□□□□□ -1.8
FOXA1-203ENST00000553751 PHGR1C9JFL3 82 aa3.73□□□□□ -1.81
FOXA1-203ENST00000553751 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
FOXA1-203ENST00000553751 PRM1P04553 51 aa3.46□□□□□ -1.86
FOXA1-203ENST00000553751 MUC19Q7Z5P9 8384 aa3.38□□□□□ -1.87
FOXA1-203ENST00000553751 INE1O15225 51 aa3.09□□□□□ -1.91
FOXA1-203ENST00000553751 KRTAP21-1Q3LI58 79 aa2.75□□□□□ -1.97
FOXA1-203ENST00000553751 MUC16Q8WXI7 14507 aa2.36□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 8.2 ms