RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FSIP2Q5CZC0 6907 aa5.84□□□□□ -1.47
SYNE3-202ENST00000553340 SSPOA2VEC9 5147 aa5.75□□□□□ -1.49
SYNE3-202ENST00000553340 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
SYNE3-202ENST00000553340 KRTAP19-6Q3LI70 58 aa5.66□□□□□ -1.5
SYNE3-202ENST00000553340 KRTAP4-3Q9BYR4 195 aa5.64□□□□□ -1.51
SYNE3-202ENST00000553340 MT1GP13640 62 aa5.62□□□□□ -1.51
SYNE3-202ENST00000553340 CRCT1Q9UGL9 99 aa5.6□□□□□ -1.51
SYNE3-202ENST00000553340 MT1MQ8N339 61 aa5.57□□□□□ -1.52
SYNE3-202ENST00000553340 KRTAP19-3Q7Z4W3 81 aa5.54□□□□□ -1.52
SYNE3-202ENST00000553340 FCGBPQ9Y6R7 5405 aaPredicted RBP5.5□□□□□ -1.53
SYNE3-202ENST00000553340 KRTAP12-4P60329 112 aa5.47□□□□□ -1.53
SYNE3-202ENST00000553340 MUC12Q9UKN1 5478 aa5.4□□□□□ -1.54
SYNE3-202ENST00000553340 KRTAP9-7A8MTY7 169 aa5.39□□□□□ -1.55
SYNE3-202ENST00000553340 LCE5AQ5TCM9 118 aa5.31□□□□□ -1.56
SYNE3-202ENST00000553340 MACF1Q9UPN3 7388 aaKnown RBP5.28□□□□□ -1.56
SYNE3-202ENST00000553340 LCE3BQ5TA77 95 aa5.26□□□□□ -1.57
SYNE3-202ENST00000553340 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.24□□□□□ -1.57
SYNE3-202ENST00000553340 DSTQ03001 7570 aaKnown RBP5.23□□□□□ -1.57
SYNE3-202ENST00000553340 SPRR2FQ96RM1 72 aa5.23□□□□□ -1.57
SYNE3-202ENST00000553340 MT1AP04731 61 aa5.17□□□□□ -1.58
SYNE3-202ENST00000553340 SYNE2Q8WXH0 6885 aaKnown RBP5.16□□□□□ -1.58
SYNE3-202ENST00000553340 KRTAP4-9Q9BYQ8 210 aa5.15□□□□□ -1.58
SYNE3-202ENST00000553340 KRTAP6-1Q3LI64 71 aa5.09□□□□□ -1.59
SYNE3-202ENST00000553340 SYNE1Q8NF91 8797 aaKnown RBP5.06□□□□□ -1.6
SYNE3-202ENST00000553340 LCE3DQ9BYE3 92 aa5.04□□□□□ -1.6
SYNE3-202ENST00000553340 LCE3EQ5T5B0 92 aa5□□□□□ -1.61
SYNE3-202ENST00000553340 KRTAP5-9P26371 169 aa4.94□□□□□ -1.62
SYNE3-202ENST00000553340 KRTAP6-3Q3LI67 103 aa4.93□□□□□ -1.62
SYNE3-202ENST00000553340 KRTAP5-5Q701N2 237 aaPredicted RBP4.9□□□□□ -1.63
SYNE3-202ENST00000553340 MDN1Q9NU22 5596 aa4.88□□□□□ -1.63
SYNE3-202ENST00000553340 PRM1P04553 51 aa4.86□□□□□ -1.63
SYNE3-202ENST00000553340 LCE1AQ5T7P2 110 aa4.82□□□□□ -1.64
SYNE3-202ENST00000553340 SPRR2EP22531 72 aa4.76□□□□□ -1.65
SYNE3-202ENST00000553340 SPRR2BP35325 72 aa4.76□□□□□ -1.65
SYNE3-202ENST00000553340 SPRR2AP35326 72 aa4.76□□□□□ -1.65
SYNE3-202ENST00000553340 KRTAP9-4Q9BYQ2 154 aa4.73□□□□□ -1.65
SYNE3-202ENST00000553340 KRTAP20-1Q3LI63 56 aa4.69□□□□□ -1.66
SYNE3-202ENST00000553340 NEBP20929 6669 aa4.68□□□□□ -1.66
SYNE3-202ENST00000553340 KRTAP6-2Q3LI66 62 aa4.66□□□□□ -1.66
SYNE3-202ENST00000553340 SPRR2DP22532 72 aa4.58□□□□□ -1.68
SYNE3-202ENST00000553340 MT3P25713 68 aa4.53□□□□□ -1.68
SYNE3-202ENST00000553340 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
SYNE3-202ENST00000553340 GPR98Q8WXG9 6306 aa4.35□□□□□ -1.71
SYNE3-202ENST00000553340 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
SYNE3-202ENST00000553340 KRTAP5-4Q6L8H1 288 aa4.17□□□□□ -1.74
SYNE3-202ENST00000553340 LCE4AQ5TA78 99 aa4.03□□□□□ -1.76
SYNE3-202ENST00000553340 MT4P47944 62 aa4.01□□□□□ -1.77
SYNE3-202ENST00000553340 KRTAP4-6Q9BYQ5 205 aa4.01□□□□□ -1.77
SYNE3-202ENST00000553340 LCE1DQ5T752 114 aa3.95□□□□□ -1.78
SYNE3-202ENST00000553340 HMCN1Q96RW7 5635 aa3.95□□□□□ -1.78
SYNE3-202ENST00000553340 KRTAP5-2Q701N4 177 aa3.94□□□□□ -1.78
SYNE3-202ENST00000553340 KRTAP20-2Q3LI61 65 aa3.92□□□□□ -1.78
SYNE3-202ENST00000553340 MUC5ACP98088 5654 aa3.79□□□□□ -1.8
SYNE3-202ENST00000553340 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
SYNE3-202ENST00000553340 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
SYNE3-202ENST00000553340 AHNAK2Q8IVF2 5795 aa3.69□□□□□ -1.82
SYNE3-202ENST00000553340 KRTAP5-10Q6L8G5 202 aa3.67□□□□□ -1.82
SYNE3-202ENST00000553340 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
SYNE3-202ENST00000553340 KRTAP4-11Q9BYQ6 195 aa3.63□□□□□ -1.83
SYNE3-202ENST00000553340 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SYNE3-202ENST00000553340 KRTAP5-1Q6L8H4 278 aa3.57□□□□□ -1.84
SYNE3-202ENST00000553340 LCE1CQ5T751 118 aa3.44□□□□□ -1.86
SYNE3-202ENST00000553340 KRTAP4-2Q9BYR5 136 aa3.43□□□□□ -1.86
SYNE3-202ENST00000553340 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
SYNE3-202ENST00000553340 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
SYNE3-202ENST00000553340 KRTAP21-2Q3LI59 83 aa3.27□□□□□ -1.89
SYNE3-202ENST00000553340 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
SYNE3-202ENST00000553340 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
SYNE3-202ENST00000553340 MUC5BQ9HC84 5762 aaPredicted RBP3.22□□□□□ -1.89
SYNE3-202ENST00000553340 KRTAP9-9Q9BYP9 154 aa3.18□□□□□ -1.9
SYNE3-202ENST00000553340 KRTAP21-1Q3LI58 79 aa3.08□□□□□ -1.92
SYNE3-202ENST00000553340 KRTAP4-12Q9BQ66 201 aa2.99□□□□□ -1.93
SYNE3-202ENST00000553340 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
SYNE3-202ENST00000553340 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
SYNE3-202ENST00000553340 MUC19Q7Z5P9 8384 aa2.9□□□□□ -1.95
SYNE3-202ENST00000553340 PHGR1C9JFL3 82 aa2.53□□□□□ -2
SYNE3-202ENST00000553340 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 61.6 ms