RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 MT2AP02795 61 aa2.72□□□□□ -1.97
SYNE1-239ENST00000545694 KRTAP25-1Q3LHN0 102 aa2.72□□□□□ -1.97
SYNE1-239ENST00000545694 CAMK2N1Q7Z7J9 78 aa2.72□□□□□ -1.97
SYNE1-239ENST00000545694 PLAC4Q8WY50 150 aa2.72□□□□□ -1.97
SYNE1-239ENST00000545694 PRAC1Q96KF2 57 aa2.71□□□□□ -1.98
SYNE1-239ENST00000545694 MT1FP04733 61 aa2.69□□□□□ -1.98
SYNE1-239ENST00000545694 KRTAP19-8Q3LI54 63 aa2.69□□□□□ -1.98
SYNE1-239ENST00000545694 PP632Q6XCG6 107 aa2.66□□□□□ -1.98
SYNE1-239ENST00000545694 C10orf95Q9H7T3 257 aa2.65□□□□□ -1.99
SYNE1-239ENST00000545694 TNP1P09430 55 aa2.63□□□□□ -1.99
SYNE1-239ENST00000545694 LCE3AQ5TA76 89 aa2.61□□□□□ -1.99
SYNE1-239ENST00000545694 LCE3EQ5T5B0 92 aa2.6□□□□□ -1.99
SYNE1-239ENST00000545694 PRO2289Q9P1D8 64 aa2.59□□□□□ -1.99
SYNE1-239ENST00000545694 MT1BP07438 61 aa2.58□□□□□ -2
SYNE1-239ENST00000545694 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
SYNE1-239ENST00000545694 MT1XP80297 61 aa2.52□□□□□ -2.01
SYNE1-239ENST00000545694 USH2AO75445 5202 aa2.46□□□□□ -2.02
SYNE1-239ENST00000545694 KRTAP8-1Q8IUC2 63 aa2.45□□□□□ -2.02
SYNE1-239ENST00000545694 NDUFAF8A1L188 74 aa2.43□□□□□ -2.02
SYNE1-239ENST00000545694 SSPOA2VEC9 5147 aa2.42□□□□□ -2.02
SYNE1-239ENST00000545694 KRTAP19-6Q3LI70 58 aa2.41□□□□□ -2.02
SYNE1-239ENST00000545694 KRTAP5-5Q701N2 237 aaPredicted RBP2.38□□□□□ -2.03
SYNE1-239ENST00000545694 KRTAP12-3P60328 96 aa2.37□□□□□ -2.03
SYNE1-239ENST00000545694 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
SYNE1-239ENST00000545694 LUZP6Q538Z0 58 aa2.33□□□□□ -2.04
SYNE1-239ENST00000545694 KRTAP19-5Q3LI72 72 aa2.28□□□□□ -2.04
SYNE1-239ENST00000545694 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
SYNE1-239ENST00000545694 LCE1BQ5T7P3 118 aa2.26□□□□□ -2.05
SYNE1-239ENST00000545694 FCGBPQ9Y6R7 5405 aaPredicted RBP2.26□□□□□ -2.05
SYNE1-239ENST00000545694 KRTAP19-7Q3SYF9 63 aa2.25□□□□□ -2.05
SYNE1-239ENST00000545694 KMT2DO14686 5537 aa2.24□□□□□ -2.05
SYNE1-239ENST00000545694 MT1EP04732 61 aa2.21□□□□□ -2.06
SYNE1-239ENST00000545694 FSIP2Q5CZC0 6907 aa2.21□□□□□ -2.06
SYNE1-239ENST00000545694 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
SYNE1-239ENST00000545694 MT1LQ93083 61 aa2.18□□□□□ -2.06
SYNE1-239ENST00000545694 MT1GP13640 62 aa2.15□□□□□ -2.07
SYNE1-239ENST00000545694 KRTAP19-3Q7Z4W3 81 aa2.14□□□□□ -2.07
SYNE1-239ENST00000545694 KRTAP5-8O75690 187 aa2.12□□□□□ -2.07
SYNE1-239ENST00000545694 SPRR2FQ96RM1 72 aa2.11□□□□□ -2.07
SYNE1-239ENST00000545694 MUC12Q9UKN1 5478 aa2.09□□□□□ -2.07
SYNE1-239ENST00000545694 MT1MQ8N339 61 aa2.08□□□□□ -2.08
SYNE1-239ENST00000545694 MACF1Q9UPN3 7388 aaKnown RBP2.08□□□□□ -2.08
SYNE1-239ENST00000545694 KRTAP6-3Q3LI67 103 aa2.05□□□□□ -2.08
SYNE1-239ENST00000545694 LCE3DQ9BYE3 92 aa2.01□□□□□ -2.09
SYNE1-239ENST00000545694 MDN1Q9NU22 5596 aa2□□□□□ -2.09
SYNE1-239ENST00000545694 SYNE2Q8WXH0 6885 aaKnown RBP1.99□□□□□ -2.09
SYNE1-239ENST00000545694 KRTAP2-3P0C7H8 128 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 SPRR2EP22531 72 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 SPRR2BP35325 72 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 SPRR2AP35326 72 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 KRTAP2-4Q9BYR9 128 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 KRTAP2-1Q9BYU5 128 aa1.98□□□□□ -2.09
SYNE1-239ENST00000545694 INE1O15225 51 aa1.96□□□□□ -2.1
SYNE1-239ENST00000545694 SPRR2DP22532 72 aa1.92□□□□□ -2.1
SYNE1-239ENST00000545694 MT1AP04731 61 aa1.88□□□□□ -2.11
SYNE1-239ENST00000545694 DSTQ03001 7570 aaKnown RBP1.87□□□□□ -2.11
SYNE1-239ENST00000545694 KRTAP5-7Q6L8G8 165 aa1.86□□□□□ -2.11
SYNE1-239ENST00000545694 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
SYNE1-239ENST00000545694 NEBP20929 6669 aa1.84□□□□□ -2.11
SYNE1-239ENST00000545694 KRTAP6-1Q3LI64 71 aa1.81□□□□□ -2.12
SYNE1-239ENST00000545694 SYNE1Q8NF91 8797 aaKnown RBP1.79□□□□□ -2.12
SYNE1-239ENST00000545694 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
SYNE1-239ENST00000545694 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
SYNE1-239ENST00000545694 KRTAP6-2Q3LI66 62 aa1.66□□□□□ -2.14
SYNE1-239ENST00000545694 KRTAP21-2Q3LI59 83 aa1.65□□□□□ -2.15
SYNE1-239ENST00000545694 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
SYNE1-239ENST00000545694 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
SYNE1-239ENST00000545694 MT4P47944 62 aa1.62□□□□□ -2.15
SYNE1-239ENST00000545694 AHNAK2Q8IVF2 5795 aa1.45□□□□□ -2.18
SYNE1-239ENST00000545694 PRM1P04553 51 aa1.43□□□□□ -2.18
SYNE1-239ENST00000545694 MUC5ACP98088 5654 aa1.4□□□□□ -2.18
SYNE1-239ENST00000545694 KRTAP5-10Q6L8G5 202 aa1.38□□□□□ -2.19
SYNE1-239ENST00000545694 MUC5BQ9HC84 5762 aaPredicted RBP1.24□□□□□ -2.21
SYNE1-239ENST00000545694 GPR98Q8WXG9 6306 aa1.22□□□□□ -2.21
SYNE1-239ENST00000545694 AHNAKQ09666 5890 aaKnown RBP1.1□□□□□ -2.23
SYNE1-239ENST00000545694 PHGR1C9JFL3 82 aa1.02□□□□□ -2.25
SYNE1-239ENST00000545694 KRTAP21-1Q3LI58 79 aa0.92□□□□□ -2.26
SYNE1-239ENST00000545694 MUC16Q8WXI7 14507 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 42.7 ms