RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	KMT2D	O14686	5537 aa		4.33	□□□□□ -1.72
CPSF7-223	ENST00000544669	SSPO	A2VEC9	5147 aa		4.32	□□□□□ -1.72
CPSF7-223	ENST00000544669	KRTAP19-3	Q7Z4W3	81 aa		4.28	□□□□□ -1.72
CPSF7-223	ENST00000544669	MT1M	Q8N339	61 aa		4.23	□□□□□ -1.73
CPSF7-223	ENST00000544669	KRTAP9-2	Q9BYQ4	174 aa		4.18	□□□□□ -1.74
CPSF7-223	ENST00000544669	KRTAP9-6	A0A140TA67	174 aa		4.16	□□□□□ -1.74
CPSF7-223	ENST00000544669	LCE5A	Q5TCM9	118 aa		4.12	□□□□□ -1.75
CPSF7-223	ENST00000544669	KRTAP4-3	Q9BYR4	195 aa		4.08	□□□□□ -1.76
CPSF7-223	ENST00000544669	SPRR2F	Q96RM1	72 aa		4.07	□□□□□ -1.76
CPSF7-223	ENST00000544669	LOC100996750	A0A140TA64	210 aa		4.07	□□□□□ -1.76
CPSF7-223	ENST00000544669	FSIP2	Q5CZC0	6907 aa		4.01	□□□□□ -1.77
CPSF7-223	ENST00000544669	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.99	□□□□□ -1.77
CPSF7-223	ENST00000544669	CRCT1	Q9UGL9	99 aa		3.97	□□□□□ -1.77
CPSF7-223	ENST00000544669	MT1A	P04731	61 aa		3.93	□□□□□ -1.78
CPSF7-223	ENST00000544669	KRTAP12-4	P60329	112 aa		3.92	□□□□□ -1.78
CPSF7-223	ENST00000544669	KRTAP5-9	P26371	169 aa		3.87	□□□□□ -1.79
CPSF7-223	ENST00000544669	MUC12	Q9UKN1	5478 aa		3.85	□□□□□ -1.79
CPSF7-223	ENST00000544669	LCE1A	Q5T7P2	110 aa		3.81	□□□□□ -1.8
CPSF7-223	ENST00000544669	LCE3B	Q5TA77	95 aa		3.81	□□□□□ -1.8
CPSF7-223	ENST00000544669	KRTAP9-4	Q9BYQ2	154 aa		3.77	□□□□□ -1.81
CPSF7-223	ENST00000544669	KRTAP6-1	Q3LI64	71 aa		3.77	□□□□□ -1.81
CPSF7-223	ENST00000544669	MACF1	Q9UPN3	7388 aa	Known RBP	3.75	□□□□□ -1.81
CPSF7-223	ENST00000544669	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.74	□□□□□ -1.81
CPSF7-223	ENST00000544669	LCE3D	Q9BYE3	92 aa		3.74	□□□□□ -1.81
CPSF7-223	ENST00000544669	SPRR2E	P22531	72 aa		3.73	□□□□□ -1.81
CPSF7-223	ENST00000544669	SPRR2B	P35325	72 aa		3.73	□□□□□ -1.81
CPSF7-223	ENST00000544669	SPRR2A	P35326	72 aa		3.73	□□□□□ -1.81
CPSF7-223	ENST00000544669	LCE3E	Q5T5B0	92 aa		3.71	□□□□□ -1.82
CPSF7-223	ENST00000544669	KRTAP9-7	A8MTY7	169 aa		3.7	□□□□□ -1.82
CPSF7-223	ENST00000544669	LCE4A	Q5TA78	99 aa		3.67	□□□□□ -1.82
CPSF7-223	ENST00000544669	KRTAP9-9	Q9BYP9	154 aa		3.67	□□□□□ -1.82
CPSF7-223	ENST00000544669	DST	Q03001	7570 aa	Known RBP	3.64	□□□□□ -1.83
CPSF7-223	ENST00000544669	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.63	□□□□□ -1.83
CPSF7-223	ENST00000544669	KRTAP4-9	Q9BYQ8	210 aa		3.6	□□□□□ -1.83
CPSF7-223	ENST00000544669	SPRR2D	P22532	72 aa		3.59	□□□□□ -1.83
CPSF7-223	ENST00000544669	KRTAP6-3	Q3LI67	103 aa		3.58	□□□□□ -1.84
CPSF7-223	ENST00000544669	SYNE2	Q8WXH0	6885 aa	Known RBP	3.55	□□□□□ -1.84
CPSF7-223	ENST00000544669	MT3	P25713	68 aa		3.54	□□□□□ -1.84
CPSF7-223	ENST00000544669	SYNE1	Q8NF91	8797 aa	Known RBP	3.51	□□□□□ -1.85
CPSF7-223	ENST00000544669	MDN1	Q9NU22	5596 aa		3.5	□□□□□ -1.85
CPSF7-223	ENST00000544669	KRTAP4-12	Q9BQ66	201 aa		3.49	□□□□□ -1.85
CPSF7-223	ENST00000544669	KRTAP4-6	Q9BYQ5	205 aa		3.46	□□□□□ -1.86
CPSF7-223	ENST00000544669	PRM1	P04553	51 aa		3.42	□□□□□ -1.86
CPSF7-223	ENST00000544669	KRTAP6-2	Q3LI66	62 aa		3.4	□□□□□ -1.87
CPSF7-223	ENST00000544669	KRTAP5-4	Q6L8H1	288 aa		3.35	□□□□□ -1.87
CPSF7-223	ENST00000544669	NEB	P20929	6669 aa		3.33	□□□□□ -1.88
CPSF7-223	ENST00000544669	LCE1F	Q5T754	118 aa		3.28	□□□□□ -1.88
CPSF7-223	ENST00000544669	KRTAP20-1	Q3LI63	56 aa		3.18	□□□□□ -1.9
CPSF7-223	ENST00000544669	KRTAP2-2	Q9BYT5	123 aa		3.14	□□□□□ -1.91
CPSF7-223	ENST00000544669	KRTAP5-2	Q701N4	177 aa		3.13	□□□□□ -1.91
CPSF7-223	ENST00000544669	KRTAP20-2	Q3LI61	65 aa		3.1	□□□□□ -1.91
CPSF7-223	ENST00000544669	OBSCN	Q5VST9	7968 aa		3.07	□□□□□ -1.92
CPSF7-223	ENST00000544669	MT4	P47944	62 aa		3.05	□□□□□ -1.92
CPSF7-223	ENST00000544669	GPR98	Q8WXG9	6306 aa		3.03	□□□□□ -1.92
CPSF7-223	ENST00000544669	LCE1D	Q5T752	114 aa		3.01	□□□□□ -1.93
CPSF7-223	ENST00000544669	LCE1E	Q5T753	118 aa		2.96	□□□□□ -1.94
CPSF7-223	ENST00000544669	KRTAP5-3	Q6L8H2	238 aa		2.96	□□□□□ -1.94
CPSF7-223	ENST00000544669	KRTAP4-11	Q9BYQ6	195 aa		2.88	□□□□□ -1.95
CPSF7-223	ENST00000544669	HMCN1	Q96RW7	5635 aa		2.79	□□□□□ -1.96
CPSF7-223	ENST00000544669	LCE1C	Q5T751	118 aa		2.73	□□□□□ -1.97
CPSF7-223	ENST00000544669	LCE1B	Q5T7P3	118 aa		2.73	□□□□□ -1.97
CPSF7-223	ENST00000544669	MUC5AC	P98088	5654 aa		2.72	□□□□□ -1.97
CPSF7-223	ENST00000544669	KRTAP4-2	Q9BYR5	136 aa		2.71	□□□□□ -1.98
CPSF7-223	ENST00000544669	KRTAP5-10	Q6L8G5	202 aa		2.7	□□□□□ -1.98
CPSF7-223	ENST00000544669	KRTAP5-1	Q6L8H4	278 aa		2.7	□□□□□ -1.98
CPSF7-223	ENST00000544669	AHNAK2	Q8IVF2	5795 aa		2.62	□□□□□ -1.99
CPSF7-223	ENST00000544669	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.61	□□□□□ -1.99
CPSF7-223	ENST00000544669	KRTAP5-8	O75690	187 aa		2.54	□□□□□ -2
CPSF7-223	ENST00000544669	KRTAP5-7	Q6L8G8	165 aa		2.52	□□□□□ -2.01
CPSF7-223	ENST00000544669	KRTAP21-2	Q3LI59	83 aa		2.46	□□□□□ -2.02
CPSF7-223	ENST00000544669	KRTAP5-11	Q6L8G4	156 aa		2.35	□□□□□ -2.03
CPSF7-223	ENST00000544669	AHNAK	Q09666	5890 aa	Known RBP	2.29	□□□□□ -2.04
CPSF7-223	ENST00000544669	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.21	□□□□□ -2.06
CPSF7-223	ENST00000544669	KRTAP21-1	Q3LI58	79 aa		2.21	□□□□□ -2.06
CPSF7-223	ENST00000544669	KRTAP4-4	Q9BYR3	166 aa		2.09	□□□□□ -2.08
CPSF7-223	ENST00000544669	PHGR1	C9JFL3	82 aa		2	□□□□□ -2.09
CPSF7-223	ENST00000544669	MUC19	Q7Z5P9	8384 aa		1.86	□□□□□ -2.11
CPSF7-223	ENST00000544669	MUC16	Q8WXI7	14507 aa		1.32	□□□□□ -2.2

Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms