RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KRTAP2-4Q9BYR9 128 aa4.82□□□□□ -1.64
VPS33A-208ENST00000543633 KRTAP2-1Q9BYU5 128 aa4.82□□□□□ -1.64
VPS33A-208ENST00000543633 FCGBPQ9Y6R7 5405 aaPredicted RBP4.79□□□□□ -1.64
VPS33A-208ENST00000543633 KMT2DO14686 5537 aa4.75□□□□□ -1.65
VPS33A-208ENST00000543633 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.73□□□□□ -1.65
VPS33A-208ENST00000543633 MT1LQ93083 61 aa4.73□□□□□ -1.65
VPS33A-208ENST00000543633 MT1EP04732 61 aa4.72□□□□□ -1.65
VPS33A-208ENST00000543633 KRTAP4-7Q9BYR0 210 aa4.65□□□□□ -1.67
VPS33A-208ENST00000543633 MACF1Q9UPN3 7388 aaKnown RBP4.57□□□□□ -1.68
VPS33A-208ENST00000543633 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
VPS33A-208ENST00000543633 MT1GP13640 62 aa4.41□□□□□ -1.7
VPS33A-208ENST00000543633 MT1MQ8N339 61 aa4.39□□□□□ -1.71
VPS33A-208ENST00000543633 MUC12Q9UKN1 5478 aa4.39□□□□□ -1.71
VPS33A-208ENST00000543633 KRTAP19-3Q7Z4W3 81 aa4.39□□□□□ -1.71
VPS33A-208ENST00000543633 SPRR2FQ96RM1 72 aa4.37□□□□□ -1.71
VPS33A-208ENST00000543633 KRTAP5-9P26371 169 aa4.36□□□□□ -1.71
VPS33A-208ENST00000543633 LOC100996750A0A140TA64 210 aa4.33□□□□□ -1.72
VPS33A-208ENST00000543633 KRTAP4-3Q9BYR4 195 aa4.33□□□□□ -1.72
VPS33A-208ENST00000543633 KRTAP6-3Q3LI67 103 aa4.26□□□□□ -1.73
VPS33A-208ENST00000543633 NEBP20929 6669 aa4.25□□□□□ -1.73
VPS33A-208ENST00000543633 LCE5AQ5TCM9 118 aa4.24□□□□□ -1.73
VPS33A-208ENST00000543633 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
VPS33A-208ENST00000543633 LCE1AQ5T7P2 110 aa4.21□□□□□ -1.74
VPS33A-208ENST00000543633 KRTAP12-4P60329 112 aa4.19□□□□□ -1.74
VPS33A-208ENST00000543633 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
VPS33A-208ENST00000543633 SPRR2EP22531 72 aa4.14□□□□□ -1.75
VPS33A-208ENST00000543633 SPRR2BP35325 72 aa4.14□□□□□ -1.75
VPS33A-208ENST00000543633 SPRR2AP35326 72 aa4.14□□□□□ -1.75
VPS33A-208ENST00000543633 MT1AP04731 61 aa4.11□□□□□ -1.75
VPS33A-208ENST00000543633 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
VPS33A-208ENST00000543633 LCE3BQ5TA77 95 aa4.04□□□□□ -1.76
VPS33A-208ENST00000543633 SPRR2DP22532 72 aa3.98□□□□□ -1.77
VPS33A-208ENST00000543633 KRTAP6-1Q3LI64 71 aa3.97□□□□□ -1.77
VPS33A-208ENST00000543633 LCE3DQ9BYE3 92 aa3.92□□□□□ -1.78
VPS33A-208ENST00000543633 LCE3EQ5T5B0 92 aa3.9□□□□□ -1.78
VPS33A-208ENST00000543633 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.78
VPS33A-208ENST00000543633 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
VPS33A-208ENST00000543633 GPR98Q8WXG9 6306 aa3.85□□□□□ -1.79
VPS33A-208ENST00000543633 KRTAP4-6Q9BYQ5 205 aa3.85□□□□□ -1.79
VPS33A-208ENST00000543633 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
VPS33A-208ENST00000543633 SYNE1Q8NF91 8797 aaKnown RBP3.75□□□□□ -1.81
VPS33A-208ENST00000543633 KRTAP9-4Q9BYQ2 154 aa3.74□□□□□ -1.81
VPS33A-208ENST00000543633 PRM1P04553 51 aa3.73□□□□□ -1.81
VPS33A-208ENST00000543633 KRTAP5-4Q6L8H1 288 aa3.65□□□□□ -1.82
VPS33A-208ENST00000543633 KRTAP6-2Q3LI66 62 aa3.6□□□□□ -1.83
VPS33A-208ENST00000543633 MT3P25713 68 aa3.59□□□□□ -1.83
VPS33A-208ENST00000543633 LCE4AQ5TA78 99 aa3.53□□□□□ -1.84
VPS33A-208ENST00000543633 MT4P47944 62 aa3.47□□□□□ -1.85
VPS33A-208ENST00000543633 LCE1DQ5T752 114 aa3.43□□□□□ -1.86
VPS33A-208ENST00000543633 KRTAP20-2Q3LI61 65 aa3.4□□□□□ -1.87
VPS33A-208ENST00000543633 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.87
VPS33A-208ENST00000543633 AHNAK2Q8IVF2 5795 aa3.37□□□□□ -1.87
VPS33A-208ENST00000543633 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
VPS33A-208ENST00000543633 KRTAP5-2Q701N4 177 aa3.32□□□□□ -1.88
VPS33A-208ENST00000543633 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
VPS33A-208ENST00000543633 KRTAP5-3Q6L8H2 238 aa3.3□□□□□ -1.88
VPS33A-208ENST00000543633 KRTAP5-7Q6L8G8 165 aa3.26□□□□□ -1.89
VPS33A-208ENST00000543633 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
VPS33A-208ENST00000543633 KRTAP4-12Q9BQ66 201 aa3.25□□□□□ -1.89
VPS33A-208ENST00000543633 KRTAP9-9Q9BYP9 154 aa3.2□□□□□ -1.9
VPS33A-208ENST00000543633 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
VPS33A-208ENST00000543633 AHNAKQ09666 5890 aaKnown RBP2.98□□□□□ -1.93
VPS33A-208ENST00000543633 KRTAP4-2Q9BYR5 136 aa2.96□□□□□ -1.94
VPS33A-208ENST00000543633 KRTAP4-11Q9BYQ6 195 aa2.95□□□□□ -1.94
VPS33A-208ENST00000543633 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
VPS33A-208ENST00000543633 KRTAP5-1Q6L8H4 278 aa2.88□□□□□ -1.95
VPS33A-208ENST00000543633 KRTAP5-8O75690 187 aa2.85□□□□□ -1.95
VPS33A-208ENST00000543633 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
VPS33A-208ENST00000543633 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
VPS33A-208ENST00000543633 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
VPS33A-208ENST00000543633 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.67□□□□□ -1.98
VPS33A-208ENST00000543633 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
VPS33A-208ENST00000543633 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
VPS33A-208ENST00000543633 KRTAP5-11Q6L8G4 156 aa2.42□□□□□ -2.02
VPS33A-208ENST00000543633 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
VPS33A-208ENST00000543633 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
VPS33A-208ENST00000543633 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
VPS33A-208ENST00000543633 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 191.4 ms