RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 SYNE2Q8WXH0 6885 aaKnown RBP3.95□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP2-3P0C7H8 128 aa3.94□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP2-4Q9BYR9 128 aa3.94□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP9-7A8MTY7 169 aa3.94□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP4-7Q9BYR0 210 aa3.94□□□□□ -1.78
CDH4-201ENST00000543233 MUC12Q9UKN1 5478 aa3.93□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP19-7Q3SYF9 63 aa3.88□□□□□ -1.79
CDH4-201ENST00000543233 KRTAP12-4P60329 112 aa3.86□□□□□ -1.79
CDH4-201ENST00000543233 KRTAP19-6Q3LI70 58 aa3.85□□□□□ -1.79
CDH4-201ENST00000543233 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.83□□□□□ -1.8
CDH4-201ENST00000543233 MT1EP04732 61 aa3.77□□□□□ -1.81
CDH4-201ENST00000543233 KRTAP6-3Q3LI67 103 aa3.77□□□□□ -1.81
CDH4-201ENST00000543233 MT1LQ93083 61 aa3.75□□□□□ -1.81
CDH4-201ENST00000543233 MDN1Q9NU22 5596 aa3.72□□□□□ -1.81
CDH4-201ENST00000543233 KRTAP4-3Q9BYR4 195 aa3.72□□□□□ -1.81
CDH4-201ENST00000543233 LOC100996750A0A140TA64 210 aa3.67□□□□□ -1.82
CDH4-201ENST00000543233 KRTAP2-2Q9BYT5 123 aa3.64□□□□□ -1.83
CDH4-201ENST00000543233 MT1GP13640 62 aa3.62□□□□□ -1.83
CDH4-201ENST00000543233 SPRR2FQ96RM1 72 aa3.61□□□□□ -1.83
CDH4-201ENST00000543233 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
CDH4-201ENST00000543233 LCE1AQ5T7P2 110 aa3.56□□□□□ -1.84
CDH4-201ENST00000543233 KRTAP19-3Q7Z4W3 81 aa3.54□□□□□ -1.84
CDH4-201ENST00000543233 MT1MQ8N339 61 aa3.54□□□□□ -1.84
CDH4-201ENST00000543233 PRM1P04553 51 aa3.52□□□□□ -1.85
CDH4-201ENST00000543233 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
CDH4-201ENST00000543233 LCE5AQ5TCM9 118 aa3.45□□□□□ -1.86
CDH4-201ENST00000543233 KRTAP4-9Q9BYQ8 210 aa3.44□□□□□ -1.86
CDH4-201ENST00000543233 KRTAP19-4Q3LI73 84 aa3.44□□□□□ -1.86
CDH4-201ENST00000543233 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
CDH4-201ENST00000543233 SPRR2EP22531 72 aa3.42□□□□□ -1.86
CDH4-201ENST00000543233 SPRR2BP35325 72 aa3.42□□□□□ -1.86
CDH4-201ENST00000543233 SPRR2AP35326 72 aa3.42□□□□□ -1.86
CDH4-201ENST00000543233 NEBP20929 6669 aa3.42□□□□□ -1.86
CDH4-201ENST00000543233 LCE3BQ5TA77 95 aa3.4□□□□□ -1.87
CDH4-201ENST00000543233 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
CDH4-201ENST00000543233 SPRR2DP22532 72 aa3.28□□□□□ -1.88
CDH4-201ENST00000543233 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
CDH4-201ENST00000543233 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
CDH4-201ENST00000543233 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
CDH4-201ENST00000543233 MUC5BQ9HC84 5762 aaPredicted RBP3.26□□□□□ -1.89
CDH4-201ENST00000543233 KRTAP5-5Q701N2 237 aaPredicted RBP3.26□□□□□ -1.89
CDH4-201ENST00000543233 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
CDH4-201ENST00000543233 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
CDH4-201ENST00000543233 KRTAP5-7Q6L8G8 165 aa3.18□□□□□ -1.9
CDH4-201ENST00000543233 KRTAP9-4Q9BYQ2 154 aa3.15□□□□□ -1.91
CDH4-201ENST00000543233 KRTAP6-2Q3LI66 62 aa3.14□□□□□ -1.91
CDH4-201ENST00000543233 MT1AP04731 61 aa3.12□□□□□ -1.91
CDH4-201ENST00000543233 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
CDH4-201ENST00000543233 MT4P47944 62 aa2.99□□□□□ -1.93
CDH4-201ENST00000543233 LCE4AQ5TA78 99 aa2.95□□□□□ -1.94
CDH4-201ENST00000543233 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
CDH4-201ENST00000543233 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
CDH4-201ENST00000543233 KRTAP9-9Q9BYP9 154 aa2.91□□□□□ -1.94
CDH4-201ENST00000543233 KRTAP5-10Q6L8G5 202 aa2.9□□□□□ -1.95
CDH4-201ENST00000543233 KRTAP4-6Q9BYQ5 205 aa2.9□□□□□ -1.95
CDH4-201ENST00000543233 MT3P25713 68 aa2.87□□□□□ -1.95
CDH4-201ENST00000543233 MUC19Q7Z5P9 8384 aa2.82□□□□□ -1.96
CDH4-201ENST00000543233 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
CDH4-201ENST00000543233 KRTAP20-2Q3LI61 65 aa2.7□□□□□ -1.98
CDH4-201ENST00000543233 KRTAP4-11Q9BYQ6 195 aa2.64□□□□□ -1.99
CDH4-201ENST00000543233 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
CDH4-201ENST00000543233 KRTAP5-2Q701N4 177 aa2.58□□□□□ -2
CDH4-201ENST00000543233 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
CDH4-201ENST00000543233 LCE1BQ5T7P3 118 aa2.47□□□□□ -2.01
CDH4-201ENST00000543233 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
CDH4-201ENST00000543233 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
CDH4-201ENST00000543233 KRTAP5-1Q6L8H4 278 aa2.24□□□□□ -2.05
CDH4-201ENST00000543233 KRTAP4-2Q9BYR5 136 aa2.2□□□□□ -2.06
CDH4-201ENST00000543233 KRTAP4-4Q9BYR3 166 aa2.18□□□□□ -2.06
CDH4-201ENST00000543233 KRTAP21-1Q3LI58 79 aa2.12□□□□□ -2.07
CDH4-201ENST00000543233 KRTAP4-12Q9BQ66 201 aa2.04□□□□□ -2.08
CDH4-201ENST00000543233 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
CDH4-201ENST00000543233 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.99□□□□□ -2.09
CDH4-201ENST00000543233 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
CDH4-201ENST00000543233 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
CDH4-201ENST00000543233 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 6.7 ms