RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 FSIP2Q5CZC0 6907 aa3.13□□□□□ -1.91
PDLIM5-221ENST00000542407 KRTAP2-2Q9BYT5 123 aa3.12□□□□□ -1.91
PDLIM5-221ENST00000542407 HMCN1Q96RW7 5635 aa3.1□□□□□ -1.91
PDLIM5-221ENST00000542407 KRTAP4-12Q9BQ66 201 aa3.1□□□□□ -1.91
PDLIM5-221ENST00000542407 KRTAP4-9Q9BYQ8 210 aa3.08□□□□□ -1.92
PDLIM5-221ENST00000542407 KRTAP10-7P60409 375 aaPredicted RBP3.06□□□□□ -1.92
PDLIM5-221ENST00000542407 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
PDLIM5-221ENST00000542407 LCE1DQ5T752 114 aa3.05□□□□□ -1.92
PDLIM5-221ENST00000542407 KRTAP8-1Q8IUC2 63 aa3.03□□□□□ -1.93
PDLIM5-221ENST00000542407 SSPOA2VEC9 5147 aa3.02□□□□□ -1.93
PDLIM5-221ENST00000542407 KRTAP12-3P60328 96 aa3.02□□□□□ -1.93
PDLIM5-221ENST00000542407 KRTAP10-12P60413 245 aa3.01□□□□□ -1.93
PDLIM5-221ENST00000542407 KRTAP19-6Q3LI70 58 aa2.95□□□□□ -1.94
PDLIM5-221ENST00000542407 KMT2DO14686 5537 aa2.94□□□□□ -1.94
PDLIM5-221ENST00000542407 MT3P25713 68 aa2.93□□□□□ -1.94
PDLIM5-221ENST00000542407 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
PDLIM5-221ENST00000542407 KRTAP6-3Q3LI67 103 aa2.89□□□□□ -1.95
PDLIM5-221ENST00000542407 KRTAP19-5Q3LI72 72 aa2.88□□□□□ -1.95
PDLIM5-221ENST00000542407 KRTAP19-7Q3SYF9 63 aa2.85□□□□□ -1.95
PDLIM5-221ENST00000542407 LCE1EQ5T753 118 aa2.85□□□□□ -1.95
PDLIM5-221ENST00000542407 FCGBPQ9Y6R7 5405 aaPredicted RBP2.84□□□□□ -1.95
PDLIM5-221ENST00000542407 KRTAP4-11Q9BYQ6 195 aa2.8□□□□□ -1.96
PDLIM5-221ENST00000542407 KRTAP9-6A8MVA2 160 aa2.78□□□□□ -1.96
PDLIM5-221ENST00000542407 MT1EP04732 61 aa2.77□□□□□ -1.97
PDLIM5-221ENST00000542407 KRTAP20-1Q3LI63 56 aa2.76□□□□□ -1.97
PDLIM5-221ENST00000542407 MT1LQ93083 61 aa2.73□□□□□ -1.97
PDLIM5-221ENST00000542407 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
PDLIM5-221ENST00000542407 KRTAP2-3P0C7H8 128 aa2.72□□□□□ -1.97
PDLIM5-221ENST00000542407 KRTAP2-4Q9BYR9 128 aa2.72□□□□□ -1.97
PDLIM5-221ENST00000542407 KRTAP2-1Q9BYU5 128 aa2.72□□□□□ -1.97
PDLIM5-221ENST00000542407 MACF1Q9UPN3 7388 aaKnown RBP2.69□□□□□ -1.98
PDLIM5-221ENST00000542407 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
PDLIM5-221ENST00000542407 MUC12Q9UKN1 5478 aa2.66□□□□□ -1.98
PDLIM5-221ENST00000542407 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
PDLIM5-221ENST00000542407 KRTAP19-3Q7Z4W3 81 aa2.63□□□□□ -1.99
PDLIM5-221ENST00000542407 NEBP20929 6669 aa2.62□□□□□ -1.99
PDLIM5-221ENST00000542407 SYNE2Q8WXH0 6885 aaKnown RBP2.61□□□□□ -1.99
PDLIM5-221ENST00000542407 SPRR2FQ96RM1 72 aa2.61□□□□□ -1.99
PDLIM5-221ENST00000542407 KRTAP5-9P26371 169 aa2.6□□□□□ -1.99
PDLIM5-221ENST00000542407 MT1MQ8N339 61 aa2.6□□□□□ -1.99
PDLIM5-221ENST00000542407 MT1GP13640 62 aa2.59□□□□□ -1.99
PDLIM5-221ENST00000542407 KRTAP4-3Q9BYR4 195 aa2.58□□□□□ -2
PDLIM5-221ENST00000542407 MDN1Q9NU22 5596 aa2.54□□□□□ -2
PDLIM5-221ENST00000542407 SPRR2EP22531 72 aa2.44□□□□□ -2.02
PDLIM5-221ENST00000542407 SPRR2BP35325 72 aa2.44□□□□□ -2.02
PDLIM5-221ENST00000542407 SPRR2AP35326 72 aa2.44□□□□□ -2.02
PDLIM5-221ENST00000542407 DSTQ03001 7570 aaKnown RBP2.43□□□□□ -2.02
PDLIM5-221ENST00000542407 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
PDLIM5-221ENST00000542407 PRM1P04553 51 aa2.4□□□□□ -2.03
PDLIM5-221ENST00000542407 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
PDLIM5-221ENST00000542407 KRTAP5-5Q701N2 237 aaPredicted RBP2.37□□□□□ -2.03
PDLIM5-221ENST00000542407 SYNE1Q8NF91 8797 aaKnown RBP2.36□□□□□ -2.03
PDLIM5-221ENST00000542407 SPRR2DP22532 72 aa2.35□□□□□ -2.03
PDLIM5-221ENST00000542407 KRTAP6-1Q3LI64 71 aa2.31□□□□□ -2.04
PDLIM5-221ENST00000542407 MT1AP04731 61 aa2.31□□□□□ -2.04
PDLIM5-221ENST00000542407 KRTAP5-7Q6L8G8 165 aa2.21□□□□□ -2.06
PDLIM5-221ENST00000542407 OBSCNQ5VST9 7968 aa2.21□□□□□ -2.06
PDLIM5-221ENST00000542407 KRTAP5-4Q6L8H1 288 aa2.2□□□□□ -2.06
PDLIM5-221ENST00000542407 KRTAP5-10Q6L8G5 202 aa2.15□□□□□ -2.07
PDLIM5-221ENST00000542407 KRTAP6-2Q3LI66 62 aa2.14□□□□□ -2.07
PDLIM5-221ENST00000542407 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.07
PDLIM5-221ENST00000542407 AHNAK2Q8IVF2 5795 aa2.05□□□□□ -2.08
PDLIM5-221ENST00000542407 MT4P47944 62 aa2.04□□□□□ -2.08
PDLIM5-221ENST00000542407 KRTAP20-2Q3LI61 65 aa2.03□□□□□ -2.08
PDLIM5-221ENST00000542407 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
PDLIM5-221ENST00000542407 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
PDLIM5-221ENST00000542407 LCE1CQ5T751 118 aa1.81□□□□□ -2.12
PDLIM5-221ENST00000542407 LCE1BQ5T7P3 118 aa1.81□□□□□ -2.12
PDLIM5-221ENST00000542407 KRTAP5-11Q6L8G4 156 aa1.81□□□□□ -2.12
PDLIM5-221ENST00000542407 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
PDLIM5-221ENST00000542407 KRTAP5-1Q6L8H4 278 aa1.77□□□□□ -2.13
PDLIM5-221ENST00000542407 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
PDLIM5-221ENST00000542407 MUC5ACP98088 5654 aa1.74□□□□□ -2.13
PDLIM5-221ENST00000542407 KRTAP21-1Q3LI58 79 aa1.59□□□□□ -2.15
PDLIM5-221ENST00000542407 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
PDLIM5-221ENST00000542407 PHGR1C9JFL3 82 aa1.26□□□□□ -2.21
PDLIM5-221ENST00000542407 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 99.8 ms