RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KRTAP4-7Q9BYR0 210 aa5.29□□□□□ -1.56
CLSTN3-213ENST00000541953 ATP5EP56381 51 aaPredicted RBP5.27□□□□□ -1.57
CLSTN3-213ENST00000541953 CCDC179H3BU77 68 aa5.23□□□□□ -1.57
CLSTN3-213ENST00000541953 A0A1B0GU33 70 aa5.22□□□□□ -1.57
CLSTN3-213ENST00000541953 SERP1Q9Y6X1 66 aa5.21□□□□□ -1.58
CLSTN3-213ENST00000541953 KRTAP20-2Q3LI61 65 aa5.2□□□□□ -1.58
CLSTN3-213ENST00000541953 SEC61GP60059 68 aa5.18□□□□□ -1.58
CLSTN3-213ENST00000541953 TMEM258P61165 79 aa5.18□□□□□ -1.58
CLSTN3-213ENST00000541953 A8MU10 97 aa5.16□□□□□ -1.58
CLSTN3-213ENST00000541953 KRTAP5-5Q701N2 237 aaPredicted RBP5.14□□□□□ -1.59
CLSTN3-213ENST00000541953 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
CLSTN3-213ENST00000541953 TNP1P09430 55 aa5.09□□□□□ -1.59
CLSTN3-213ENST00000541953 SPRR5A0A1B0GTR4 108 aa5.06□□□□□ -1.6
CLSTN3-213ENST00000541953 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
CLSTN3-213ENST00000541953 SMIM26A0A096LP01 95 aa5.02□□□□□ -1.61
CLSTN3-213ENST00000541953 LOC100996750A0A140TA64 210 aa5.02□□□□□ -1.61
CLSTN3-213ENST00000541953 PRR15LQ9BU68 103 aa5.02□□□□□ -1.61
CLSTN3-213ENST00000541953 A0A1B0GU69 56 aa5□□□□□ -1.61
CLSTN3-213ENST00000541953 KRTAP12-4P60329 112 aa4.96□□□□□ -1.62
CLSTN3-213ENST00000541953 V9GYY9 64 aa4.95□□□□□ -1.62
CLSTN3-213ENST00000541953 LINC01558Q9Y6Z2 57 aa4.94□□□□□ -1.62
CLSTN3-213ENST00000541953 RPS28P62857 69 aaKnown RBP4.91□□□□□ -1.62
CLSTN3-213ENST00000541953 Q1T7F1 81 aa4.83□□□□□ -1.64
CLSTN3-213ENST00000541953 UQCR11O14957 56 aa4.82□□□□□ -1.64
CLSTN3-213ENST00000541953 KRTAP4-11Q9BYQ6 195 aa4.8□□□□□ -1.64
CLSTN3-213ENST00000541953 KRTAP5-2Q701N4 177 aa4.75□□□□□ -1.65
CLSTN3-213ENST00000541953 AHNAKQ09666 5890 aaKnown RBP4.7□□□□□ -1.66
CLSTN3-213ENST00000541953 MUC5BQ9HC84 5762 aaPredicted RBP4.7□□□□□ -1.66
CLSTN3-213ENST00000541953 KRTAP5-8O75690 187 aa4.69□□□□□ -1.66
CLSTN3-213ENST00000541953 MIR22HGQ0VDD5 57 aa4.69□□□□□ -1.66
CLSTN3-213ENST00000541953 KRTAP6-1Q3LI64 71 aa4.69□□□□□ -1.66
CLSTN3-213ENST00000541953 MUC5ACP98088 5654 aa4.69□□□□□ -1.66
CLSTN3-213ENST00000541953 PSPHP1O15172 72 aa4.68□□□□□ -1.66
CLSTN3-213ENST00000541953 K7ERS5 55 aa4.67□□□□□ -1.66
CLSTN3-213ENST00000541953 MT1AP04731 61 aa4.63□□□□□ -1.67
CLSTN3-213ENST00000541953 KRTAP25-1Q3LHN0 102 aa4.63□□□□□ -1.67
CLSTN3-213ENST00000541953 OBSCNQ5VST9 7968 aa4.63□□□□□ -1.67
CLSTN3-213ENST00000541953 A6NED7 52 aa4.61□□□□□ -1.67
CLSTN3-213ENST00000541953 LCE3CQ5T5A8 94 aa4.61□□□□□ -1.67
CLSTN3-213ENST00000541953 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
CLSTN3-213ENST00000541953 KRTAP19-4Q3LI73 84 aa4.56□□□□□ -1.68
CLSTN3-213ENST00000541953 KRTAP6-2Q3LI66 62 aa4.52□□□□□ -1.69
CLSTN3-213ENST00000541953 KRTAP9-4Q9BYQ2 154 aa4.51□□□□□ -1.69
CLSTN3-213ENST00000541953 KRTAP9-6A8MVA2 160 aa4.5□□□□□ -1.69
CLSTN3-213ENST00000541953 CDC42SE1Q9NRR8 79 aa4.48□□□□□ -1.69
CLSTN3-213ENST00000541953 KRTAP9-9Q9BYP9 154 aa4.41□□□□□ -1.7
CLSTN3-213ENST00000541953 KRTAP23-1A1A580 65 aa4.39□□□□□ -1.71
CLSTN3-213ENST00000541953 KRTAP5-1Q6L8H4 278 aa4.34□□□□□ -1.71
CLSTN3-213ENST00000541953 ROMO1P60602 79 aa4.3□□□□□ -1.72
CLSTN3-213ENST00000541953 BRK1Q8WUW1 75 aa4.3□□□□□ -1.72
CLSTN3-213ENST00000541953 PRO0628Q9UI54 55 aa4.26□□□□□ -1.73
CLSTN3-213ENST00000541953 MT3P25713 68 aa4.2□□□□□ -1.74
CLSTN3-213ENST00000541953 PMAIP1Q13794 54 aa4.08□□□□□ -1.76
CLSTN3-213ENST00000541953 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
CLSTN3-213ENST00000541953 KTN1-AS1Q86SY8 53 aa3.93□□□□□ -1.78
CLSTN3-213ENST00000541953 SVIPQ8NHG7 77 aa3.9□□□□□ -1.79
CLSTN3-213ENST00000541953 KRTAP4-2Q9BYR5 136 aa3.86□□□□□ -1.79
CLSTN3-213ENST00000541953 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
CLSTN3-213ENST00000541953 LCE1BQ5T7P3 118 aa3.79□□□□□ -1.8
CLSTN3-213ENST00000541953 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
CLSTN3-213ENST00000541953 KRTAP4-12Q9BQ66 201 aa3.63□□□□□ -1.83
CLSTN3-213ENST00000541953 H3BS24 57 aa3.46□□□□□ -1.86
CLSTN3-213ENST00000541953 KRTAP5-11Q6L8G4 156 aa3.4□□□□□ -1.87
CLSTN3-213ENST00000541953 LUZP6Q538Z0 58 aa3.32□□□□□ -1.88
CLSTN3-213ENST00000541953 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
CLSTN3-213ENST00000541953 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CLSTN3-213ENST00000541953 LCE3DQ9BYE3 92 aa3.23□□□□□ -1.89
CLSTN3-213ENST00000541953 PHGR1C9JFL3 82 aa3.2□□□□□ -1.9
CLSTN3-213ENST00000541953 KRTAP21-2Q3LI59 83 aa3.1□□□□□ -1.91
CLSTN3-213ENST00000541953 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
CLSTN3-213ENST00000541953 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
CLSTN3-213ENST00000541953 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
CLSTN3-213ENST00000541953 MUC19Q7Z5P9 8384 aa2.92□□□□□ -1.94
CLSTN3-213ENST00000541953 A0A0A0MQY5 61 aa2.67□□□□□ -1.98
CLSTN3-213ENST00000541953 INE1O15225 51 aa2.55□□□□□ -2
CLSTN3-213ENST00000541953 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CLSTN3-213ENST00000541953 PRM1P04553 51 aa2.14□□□□□ -2.07
CLSTN3-213ENST00000541953 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 9.5 ms