RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SYNE2Q8WXH0 6885 aaKnown RBP4.95□□□□□ -1.62
RTN3-210ENST00000540798 MT1EP04732 61 aa4.9□□□□□ -1.62
RTN3-210ENST00000540798 KRTAP19-4Q3LI73 84 aa4.9□□□□□ -1.63
RTN3-210ENST00000540798 MT1LQ93083 61 aa4.86□□□□□ -1.63
RTN3-210ENST00000540798 KRTAP9-6A8MVA2 160 aa4.77□□□□□ -1.65
RTN3-210ENST00000540798 KRTAP4-7Q9BYR0 210 aa4.76□□□□□ -1.65
RTN3-210ENST00000540798 KRTAP6-3Q3LI67 103 aa4.7□□□□□ -1.66
RTN3-210ENST00000540798 MUC12Q9UKN1 5478 aa4.67□□□□□ -1.66
RTN3-210ENST00000540798 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
RTN3-210ENST00000540798 MT1GP13640 62 aa4.6□□□□□ -1.67
RTN3-210ENST00000540798 MT1MQ8N339 61 aa4.59□□□□□ -1.67
RTN3-210ENST00000540798 MDN1Q9NU22 5596 aa4.56□□□□□ -1.68
RTN3-210ENST00000540798 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
RTN3-210ENST00000540798 KRTAP2-4Q9BYR9 128 aa4.56□□□□□ -1.68
RTN3-210ENST00000540798 KRTAP2-1Q9BYU5 128 aa4.56□□□□□ -1.68
RTN3-210ENST00000540798 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
RTN3-210ENST00000540798 NEBP20929 6669 aa4.53□□□□□ -1.68
RTN3-210ENST00000540798 LCE5AQ5TCM9 118 aa4.53□□□□□ -1.68
RTN3-210ENST00000540798 SPRR2FQ96RM1 72 aa4.52□□□□□ -1.69
RTN3-210ENST00000540798 KRTAP5-9P26371 169 aa4.5□□□□□ -1.69
RTN3-210ENST00000540798 LOC100996750A0A140TA64 210 aa4.46□□□□□ -1.7
RTN3-210ENST00000540798 SPRR2EP22531 72 aa4.39□□□□□ -1.71
RTN3-210ENST00000540798 SPRR2BP35325 72 aa4.39□□□□□ -1.71
RTN3-210ENST00000540798 SPRR2AP35326 72 aa4.39□□□□□ -1.71
RTN3-210ENST00000540798 KRTAP20-1Q3LI63 56 aa4.36□□□□□ -1.71
RTN3-210ENST00000540798 LCE1AQ5T7P2 110 aa4.32□□□□□ -1.72
RTN3-210ENST00000540798 SPRR2DP22532 72 aa4.24□□□□□ -1.73
RTN3-210ENST00000540798 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
RTN3-210ENST00000540798 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.74
RTN3-210ENST00000540798 KRTAP2-2Q9BYT5 123 aa4.11□□□□□ -1.75
RTN3-210ENST00000540798 MT1AP04731 61 aa4.11□□□□□ -1.75
RTN3-210ENST00000540798 LCE3BQ5TA77 95 aa4.11□□□□□ -1.75
RTN3-210ENST00000540798 KRTAP12-4P60329 112 aa4.1□□□□□ -1.75
RTN3-210ENST00000540798 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.75
RTN3-210ENST00000540798 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
RTN3-210ENST00000540798 KRTAP9-4Q9BYQ2 154 aa3.88□□□□□ -1.79
RTN3-210ENST00000540798 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
RTN3-210ENST00000540798 KRTAP5-4Q6L8H1 288 aa3.79□□□□□ -1.8
RTN3-210ENST00000540798 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
RTN3-210ENST00000540798 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
RTN3-210ENST00000540798 PRM1P04553 51 aa3.76□□□□□ -1.81
RTN3-210ENST00000540798 MT4P47944 62 aa3.75□□□□□ -1.81
RTN3-210ENST00000540798 LCE1DQ5T752 114 aa3.73□□□□□ -1.81
RTN3-210ENST00000540798 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
RTN3-210ENST00000540798 HMCN1Q96RW7 5635 aa3.7□□□□□ -1.82
RTN3-210ENST00000540798 KRTAP6-2Q3LI66 62 aa3.7□□□□□ -1.82
RTN3-210ENST00000540798 LCE1EQ5T753 118 aa3.69□□□□□ -1.82
RTN3-210ENST00000540798 MT3P25713 68 aa3.68□□□□□ -1.82
RTN3-210ENST00000540798 LCE4AQ5TA78 99 aa3.68□□□□□ -1.82
RTN3-210ENST00000540798 GPR98Q8WXG9 6306 aa3.65□□□□□ -1.82
RTN3-210ENST00000540798 KRTAP4-6Q9BYQ5 205 aa3.63□□□□□ -1.83
RTN3-210ENST00000540798 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
RTN3-210ENST00000540798 KRTAP5-2Q701N4 177 aa3.5□□□□□ -1.85
RTN3-210ENST00000540798 AHNAK2Q8IVF2 5795 aa3.5□□□□□ -1.85
RTN3-210ENST00000540798 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
RTN3-210ENST00000540798 KRTAP5-10Q6L8G5 202 aa3.38□□□□□ -1.87
RTN3-210ENST00000540798 KRTAP5-7Q6L8G8 165 aa3.21□□□□□ -1.9
RTN3-210ENST00000540798 KRTAP4-11Q9BYQ6 195 aa3.15□□□□□ -1.91
RTN3-210ENST00000540798 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
RTN3-210ENST00000540798 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
RTN3-210ENST00000540798 MUC5ACP98088 5654 aa3.06□□□□□ -1.92
RTN3-210ENST00000540798 KRTAP5-8O75690 187 aa3.02□□□□□ -1.93
RTN3-210ENST00000540798 KRTAP5-1Q6L8H4 278 aa2.98□□□□□ -1.93
RTN3-210ENST00000540798 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
RTN3-210ENST00000540798 LCE1BQ5T7P3 118 aa2.94□□□□□ -1.94
RTN3-210ENST00000540798 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
RTN3-210ENST00000540798 MUC5BQ9HC84 5762 aaPredicted RBP2.9□□□□□ -1.94
RTN3-210ENST00000540798 KRTAP9-9Q9BYP9 154 aa2.86□□□□□ -1.95
RTN3-210ENST00000540798 AHNAKQ09666 5890 aaKnown RBP2.82□□□□□ -1.96
RTN3-210ENST00000540798 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.81□□□□□ -1.96
RTN3-210ENST00000540798 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
RTN3-210ENST00000540798 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
RTN3-210ENST00000540798 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
RTN3-210ENST00000540798 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
RTN3-210ENST00000540798 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
RTN3-210ENST00000540798 PHGR1C9JFL3 82 aa2.2□□□□□ -2.06
RTN3-210ENST00000540798 MUC16Q8WXI7 14507 aa1.48□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 77.7 ms