RNA–Protein interactions for RNA: ENST00000540608.5

NPC1-202, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 2

Gene NPC1, Length 2,790 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-202ENST00000540608 MT1LQ93083 61 aa4.23□□□□□ -1.73
NPC1-202ENST00000540608 FSIP2Q5CZC0 6907 aa4.22□□□□□ -1.73
NPC1-202ENST00000540608 MT1EP04732 61 aa4.21□□□□□ -1.73
NPC1-202ENST00000540608 CRCT1Q9UGL9 99 aa4.2□□□□□ -1.74
NPC1-202ENST00000540608 FCGBPQ9Y6R7 5405 aaPredicted RBP4.12□□□□□ -1.75
NPC1-202ENST00000540608 KRTAP9-6A0A140TA67 174 aa4.06□□□□□ -1.76
NPC1-202ENST00000540608 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
NPC1-202ENST00000540608 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
NPC1-202ENST00000540608 LOC100996750A0A140TA64 210 aa3.97□□□□□ -1.77
NPC1-202ENST00000540608 MT1GP13640 62 aa3.94□□□□□ -1.78
NPC1-202ENST00000540608 KRTAP19-3Q7Z4W3 81 aa3.93□□□□□ -1.78
NPC1-202ENST00000540608 MT1MQ8N339 61 aa3.93□□□□□ -1.78
NPC1-202ENST00000540608 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.9□□□□□ -1.79
NPC1-202ENST00000540608 MACF1Q9UPN3 7388 aaKnown RBP3.89□□□□□ -1.79
NPC1-202ENST00000540608 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
NPC1-202ENST00000540608 DSTQ03001 7570 aaKnown RBP3.84□□□□□ -1.79
NPC1-202ENST00000540608 KRTAP4-6Q9BYQ5 205 aa3.82□□□□□ -1.8
NPC1-202ENST00000540608 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
NPC1-202ENST00000540608 SPRR2FQ96RM1 72 aa3.81□□□□□ -1.8
NPC1-202ENST00000540608 LCE5AQ5TCM9 118 aa3.8□□□□□ -1.8
NPC1-202ENST00000540608 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
NPC1-202ENST00000540608 SYNE2Q8WXH0 6885 aaKnown RBP3.77□□□□□ -1.81
NPC1-202ENST00000540608 KRTAP9-7A8MTY7 169 aa3.69□□□□□ -1.82
NPC1-202ENST00000540608 LCE1AQ5T7P2 110 aa3.68□□□□□ -1.82
NPC1-202ENST00000540608 LCE3BQ5TA77 95 aa3.65□□□□□ -1.82
NPC1-202ENST00000540608 MDN1Q9NU22 5596 aa3.64□□□□□ -1.83
NPC1-202ENST00000540608 SPRR2EP22531 72 aa3.63□□□□□ -1.83
NPC1-202ENST00000540608 SPRR2BP35325 72 aa3.63□□□□□ -1.83
NPC1-202ENST00000540608 SPRR2AP35326 72 aa3.63□□□□□ -1.83
NPC1-202ENST00000540608 MT1AP04731 61 aa3.63□□□□□ -1.83
NPC1-202ENST00000540608 KRTAP4-9Q9BYQ8 210 aa3.59□□□□□ -1.83
NPC1-202ENST00000540608 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
NPC1-202ENST00000540608 NEBP20929 6669 aa3.54□□□□□ -1.84
NPC1-202ENST00000540608 KRTAP4-12Q9BQ66 201 aa3.53□□□□□ -1.84
NPC1-202ENST00000540608 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
NPC1-202ENST00000540608 SPRR2DP22532 72 aa3.51□□□□□ -1.85
NPC1-202ENST00000540608 LCE3DQ9BYE3 92 aa3.51□□□□□ -1.85
NPC1-202ENST00000540608 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
NPC1-202ENST00000540608 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
NPC1-202ENST00000540608 LCE4AQ5TA78 99 aa3.37□□□□□ -1.87
NPC1-202ENST00000540608 KRTAP9-9Q9BYP9 154 aa3.36□□□□□ -1.87
NPC1-202ENST00000540608 KRTAP9-4Q9BYQ2 154 aa3.36□□□□□ -1.87
NPC1-202ENST00000540608 PRM1P04553 51 aa3.34□□□□□ -1.87
NPC1-202ENST00000540608 KRTAP20-1Q3LI63 56 aa3.29□□□□□ -1.88
NPC1-202ENST00000540608 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
NPC1-202ENST00000540608 LCE1DQ5T752 114 aa3.23□□□□□ -1.89
NPC1-202ENST00000540608 KRTAP6-2Q3LI66 62 aa3.23□□□□□ -1.89
NPC1-202ENST00000540608 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
NPC1-202ENST00000540608 OBSCNQ5VST9 7968 aa3.2□□□□□ -1.9
NPC1-202ENST00000540608 MT3P25713 68 aa3.19□□□□□ -1.9
NPC1-202ENST00000540608 KRTAP4-11Q9BYQ6 195 aa3.03□□□□□ -1.92
NPC1-202ENST00000540608 MT4P47944 62 aa3.01□□□□□ -1.93
NPC1-202ENST00000540608 LCE1FQ5T754 118 aa3□□□□□ -1.93
NPC1-202ENST00000540608 KRTAP4-2Q9BYR5 136 aa2.99□□□□□ -1.93
NPC1-202ENST00000540608 KRTAP20-2Q3LI61 65 aa2.97□□□□□ -1.93
NPC1-202ENST00000540608 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
NPC1-202ENST00000540608 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.94
NPC1-202ENST00000540608 KRTAP5-3Q6L8H2 238 aa2.89□□□□□ -1.95
NPC1-202ENST00000540608 MUC5ACP98088 5654 aa2.7□□□□□ -1.98
NPC1-202ENST00000540608 AHNAK2Q8IVF2 5795 aa2.65□□□□□ -1.98
NPC1-202ENST00000540608 LCE1EQ5T753 118 aa2.65□□□□□ -1.99
NPC1-202ENST00000540608 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
NPC1-202ENST00000540608 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
NPC1-202ENST00000540608 KRTAP5-1Q6L8H4 278 aa2.52□□□□□ -2.01
NPC1-202ENST00000540608 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
NPC1-202ENST00000540608 KRTAP5-7Q6L8G8 165 aa2.46□□□□□ -2.02
NPC1-202ENST00000540608 LCE1CQ5T751 118 aa2.45□□□□□ -2.02
NPC1-202ENST00000540608 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
NPC1-202ENST00000540608 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.33□□□□□ -2.04
NPC1-202ENST00000540608 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
NPC1-202ENST00000540608 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
NPC1-202ENST00000540608 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
NPC1-202ENST00000540608 KRTAP4-4Q9BYR3 166 aa2.12□□□□□ -2.07
NPC1-202ENST00000540608 KRTAP5-11Q6L8G4 156 aa2.12□□□□□ -2.07
NPC1-202ENST00000540608 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.07
NPC1-202ENST00000540608 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
NPC1-202ENST00000540608 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
NPC1-202ENST00000540608 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms