RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	MT4	P47944	62 aa		4.52	□□□□□ -1.69
SEMA4D-223	ENST00000540475	ANAPC13	Q9BS18	74 aa		4.52	□□□□□ -1.69
SEMA4D-223	ENST00000540475	PRR15L	Q9BU68	103 aa		4.49	□□□□□ -1.69
SEMA4D-223	ENST00000540475	ATP5E	P56381	51 aa	Predicted RBP	4.48	□□□□□ -1.69
SEMA4D-223	ENST00000540475	AHNAK2	Q8IVF2	5795 aa		4.47	□□□□□ -1.69
SEMA4D-223	ENST00000540475	LINC01558	Q9Y6Z2	57 aa		4.47	□□□□□ -1.69
SEMA4D-223	ENST00000540475	CCDC179	H3BU77	68 aa		4.46	□□□□□ -1.7
SEMA4D-223	ENST00000540475	KRTAP12-3	P60328	96 aa		4.43	□□□□□ -1.7
SEMA4D-223	ENST00000540475	KRTAP4-6	Q9BYQ5	205 aa		4.43	□□□□□ -1.7
SEMA4D-223	ENST00000540475	KRTAP4-7	Q9BYR0	210 aa		4.4	□□□□□ -1.71
SEMA4D-223	ENST00000540475	KRTAP5-10	Q6L8G5	202 aa		4.38	□□□□□ -1.71
SEMA4D-223	ENST00000540475	UQCR11	O14957	56 aa		4.36	□□□□□ -1.71
SEMA4D-223	ENST00000540475	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.34	□□□□□ -1.71
SEMA4D-223	ENST00000540475	TMEM258	P61165	79 aa		4.31	□□□□□ -1.72
SEMA4D-223	ENST00000540475	KRTAP25-1	Q3LHN0	102 aa		4.29	□□□□□ -1.72
SEMA4D-223	ENST00000540475	SPRR5	A0A1B0GTR4	108 aa		4.27	□□□□□ -1.73
SEMA4D-223	ENST00000540475	KRTAP20-2	Q3LI61	65 aa		4.27	□□□□□ -1.73
SEMA4D-223	ENST00000540475	KRTAP19-4	Q3LI73	84 aa		4.27	□□□□□ -1.73
SEMA4D-223	ENST00000540475	KRTAP5-3	Q6L8H2	238 aa		4.24	□□□□□ -1.73
SEMA4D-223	ENST00000540475	MIR22HG	Q0VDD5	57 aa		4.23	□□□□□ -1.73
SEMA4D-223	ENST00000540475	KRTAP5-7	Q6L8G8	165 aa		4.23	□□□□□ -1.73
SEMA4D-223	ENST00000540475	KRTAP23-1	A1A580	65 aa		4.2	□□□□□ -1.74
SEMA4D-223	ENST00000540475	SYNE1	Q8NF91	8797 aa	Known RBP	4.19	□□□□□ -1.74
SEMA4D-223	ENST00000540475	KRTAP12-4	P60329	112 aa		4.19	□□□□□ -1.74
SEMA4D-223	ENST00000540475	LOC100996750	A0A140TA64	210 aa		4.17	□□□□□ -1.74
SEMA4D-223	ENST00000540475		K7ERS5	55 aa		4.15	□□□□□ -1.75
SEMA4D-223	ENST00000540475	KRTAP15-1	Q3LI76	137 aa		4.11	□□□□□ -1.75
SEMA4D-223	ENST00000540475		V9GYY9	64 aa		4.11	□□□□□ -1.75
SEMA4D-223	ENST00000540475		Q1T7F1	81 aa		4.1	□□□□□ -1.75
SEMA4D-223	ENST00000540475	LCE3C	Q5T5A8	94 aa		4.09	□□□□□ -1.75
SEMA4D-223	ENST00000540475		H3BS24	57 aa		4.06	□□□□□ -1.76
SEMA4D-223	ENST00000540475	PSPHP1	O15172	72 aa		4.06	□□□□□ -1.76
SEMA4D-223	ENST00000540475	KRTAP5-2	Q701N4	177 aa		3.99	□□□□□ -1.77
SEMA4D-223	ENST00000540475	MT1A	P04731	61 aa		3.97	□□□□□ -1.77
SEMA4D-223	ENST00000540475	KRTAP6-1	Q3LI64	71 aa		3.94	□□□□□ -1.78
SEMA4D-223	ENST00000540475	CDC42SE1	Q9NRR8	79 aa		3.93	□□□□□ -1.78
SEMA4D-223	ENST00000540475	PCP4	P48539	62 aa		3.92	□□□□□ -1.78
SEMA4D-223	ENST00000540475		A6NED7	52 aa		3.91	□□□□□ -1.78
SEMA4D-223	ENST00000540475	KRTAP4-11	Q9BYQ6	195 aa		3.91	□□□□□ -1.78
SEMA4D-223	ENST00000540475	ROMO1	P60602	79 aa		3.88	□□□□□ -1.79
SEMA4D-223	ENST00000540475	KRTAP9-6	A8MVA2	160 aa		3.87	□□□□□ -1.79
SEMA4D-223	ENST00000540475	KRTAP9-4	Q9BYQ2	154 aa		3.86	□□□□□ -1.79
SEMA4D-223	ENST00000540475	RPS28	P62857	69 aa	Known RBP	3.84	□□□□□ -1.79
SEMA4D-223	ENST00000540475	KRTAP5-8	O75690	187 aa		3.81	□□□□□ -1.8
SEMA4D-223	ENST00000540475	KRTAP6-2	Q3LI66	62 aa		3.77	□□□□□ -1.81
SEMA4D-223	ENST00000540475	OBSCN	Q5VST9	7968 aa		3.72	□□□□□ -1.81
SEMA4D-223	ENST00000540475	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.69	□□□□□ -1.82
SEMA4D-223	ENST00000540475	AHNAK	Q09666	5890 aa	Known RBP	3.68	□□□□□ -1.82
SEMA4D-223	ENST00000540475	MUC5AC	P98088	5654 aa		3.66	□□□□□ -1.82
SEMA4D-223	ENST00000540475	MT3	P25713	68 aa		3.63	□□□□□ -1.83
SEMA4D-223	ENST00000540475		A0A0A0MQY5	61 aa		3.6	□□□□□ -1.83
SEMA4D-223	ENST00000540475	KRTAP5-1	Q6L8H4	278 aa		3.58	□□□□□ -1.84
SEMA4D-223	ENST00000540475	KRTAP9-9	Q9BYP9	154 aa		3.58	□□□□□ -1.84
SEMA4D-223	ENST00000540475	LCE1E	Q5T753	118 aa		3.41	□□□□□ -1.86
SEMA4D-223	ENST00000540475	KRTAP4-2	Q9BYR5	136 aa		3.21	□□□□□ -1.9
SEMA4D-223	ENST00000540475	BRK1	Q8WUW1	75 aa		3.19	□□□□□ -1.9
SEMA4D-223	ENST00000540475	LCE1C	Q5T751	118 aa		3.15	□□□□□ -1.91
SEMA4D-223	ENST00000540475	LCE1B	Q5T7P3	118 aa		3.15	□□□□□ -1.91
SEMA4D-223	ENST00000540475	PRO0628	Q9UI54	55 aa		3.05	□□□□□ -1.92
SEMA4D-223	ENST00000540475	PMAIP1	Q13794	54 aa		3.01	□□□□□ -1.93
SEMA4D-223	ENST00000540475	PRAC1	Q96KF2	57 aa		2.98	□□□□□ -1.93
SEMA4D-223	ENST00000540475	LCE3D	Q9BYE3	92 aa		2.91	□□□□□ -1.94
SEMA4D-223	ENST00000540475	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.89	□□□□□ -1.95
SEMA4D-223	ENST00000540475	KRTAP4-12	Q9BQ66	201 aa		2.87	□□□□□ -1.95
SEMA4D-223	ENST00000540475	KRTAP5-11	Q6L8G4	156 aa		2.86	□□□□□ -1.95
SEMA4D-223	ENST00000540475	LCE1F	Q5T754	118 aa		2.83	□□□□□ -1.96
SEMA4D-223	ENST00000540475	KTN1-AS1	Q86SY8	53 aa		2.81	□□□□□ -1.96
SEMA4D-223	ENST00000540475	LCE3E	Q5T5B0	92 aa		2.72	□□□□□ -1.97
SEMA4D-223	ENST00000540475	NDUFAF8	A1L188	74 aa		2.69	□□□□□ -1.98
SEMA4D-223	ENST00000540475	KRTAP21-2	Q3LI59	83 aa		2.63	□□□□□ -1.99
SEMA4D-223	ENST00000540475	LUZP6	Q538Z0	58 aa		2.53	□□□□□ -2
SEMA4D-223	ENST00000540475	PHGR1	C9JFL3	82 aa		2.5	□□□□□ -2.01
SEMA4D-223	ENST00000540475	KRTAP4-4	Q9BYR3	166 aa		2.35	□□□□□ -2.03
SEMA4D-223	ENST00000540475	MUC19	Q7Z5P9	8384 aa		2.3	□□□□□ -2.04
SEMA4D-223	ENST00000540475	PRM1	P04553	51 aa		1.96	□□□□□ -2.1
SEMA4D-223	ENST00000540475	KRTAP21-1	Q3LI58	79 aa		1.93	□□□□□ -2.1
SEMA4D-223	ENST00000540475	INE1	O15225	51 aa		1.89	□□□□□ -2.11
SEMA4D-223	ENST00000540475	MUC16	Q8WXI7	14507 aa		1.63	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 55.3 ms