RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MT1EP04732 61 aa5.87□□□□□ -1.47
USP28-208ENST00000540438 MT1LQ93083 61 aa5.86□□□□□ -1.47
USP28-208ENST00000540438 LOC100996750A0A140TA64 210 aa5.85□□□□□ -1.47
USP28-208ENST00000540438 SYNE1Q8NF91 8797 aaKnown RBP5.8□□□□□ -1.48
USP28-208ENST00000540438 KRTAP19-6Q3LI70 58 aa5.78□□□□□ -1.48
USP28-208ENST00000540438 LCE2DQ5TA82 110 aaPredicted RBP5.73□□□□□ -1.49
USP28-208ENST00000540438 OBSCNQ5VST9 7968 aa5.72□□□□□ -1.49
USP28-208ENST00000540438 MT1GP13640 62 aa5.71□□□□□ -1.5
USP28-208ENST00000540438 MDN1Q9NU22 5596 aa5.7□□□□□ -1.5
USP28-208ENST00000540438 SPRR2FQ96RM1 72 aa5.62□□□□□ -1.51
USP28-208ENST00000540438 MT1MQ8N339 61 aa5.52□□□□□ -1.53
USP28-208ENST00000540438 KRTAP19-3Q7Z4W3 81 aa5.5□□□□□ -1.53
USP28-208ENST00000540438 INE1O15225 51 aa5.47□□□□□ -1.53
USP28-208ENST00000540438 KRTAP2-3P0C7H8 128 aa5.47□□□□□ -1.53
USP28-208ENST00000540438 KRTAP2-4Q9BYR9 128 aa5.47□□□□□ -1.53
USP28-208ENST00000540438 KRTAP2-1Q9BYU5 128 aa5.47□□□□□ -1.53
USP28-208ENST00000540438 KRTAP9-2Q9BYQ4 174 aa5.33□□□□□ -1.56
USP28-208ENST00000540438 LCE3BQ5TA77 95 aa5.29□□□□□ -1.56
USP28-208ENST00000540438 LCE5AQ5TCM9 118 aa5.29□□□□□ -1.56
USP28-208ENST00000540438 KRTAP4-9Q9BYQ8 210 aa5.29□□□□□ -1.56
USP28-208ENST00000540438 KRTAP19-4Q3LI73 84 aa5.15□□□□□ -1.59
USP28-208ENST00000540438 KRTAP6-1Q3LI64 71 aa5.1□□□□□ -1.59
USP28-208ENST00000540438 LCE1AQ5T7P2 110 aa5.09□□□□□ -1.6
USP28-208ENST00000540438 SPRR2EP22531 72 aa5.08□□□□□ -1.6
USP28-208ENST00000540438 SPRR2BP35325 72 aa5.08□□□□□ -1.6
USP28-208ENST00000540438 SPRR2AP35326 72 aa5.08□□□□□ -1.6
USP28-208ENST00000540438 KRTAP12-4P60329 112 aa5.08□□□□□ -1.6
USP28-208ENST00000540438 KRTAP5-9P26371 169 aa4.88□□□□□ -1.63
USP28-208ENST00000540438 SPRR2DP22532 72 aa4.83□□□□□ -1.64
USP28-208ENST00000540438 MT1AP04731 61 aa4.81□□□□□ -1.64
USP28-208ENST00000540438 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.74□□□□□ -1.65
USP28-208ENST00000540438 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
USP28-208ENST00000540438 LCE3DQ9BYE3 92 aa4.72□□□□□ -1.65
USP28-208ENST00000540438 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
USP28-208ENST00000540438 KRTAP6-2Q3LI66 62 aa4.62□□□□□ -1.67
USP28-208ENST00000540438 LCE3EQ5T5B0 92 aa4.6□□□□□ -1.67
USP28-208ENST00000540438 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
USP28-208ENST00000540438 KRTAP9-6A0A140TA67 174 aa4.56□□□□□ -1.68
USP28-208ENST00000540438 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
USP28-208ENST00000540438 PRM1P04553 51 aa4.5□□□□□ -1.69
USP28-208ENST00000540438 MT4P47944 62 aa4.49□□□□□ -1.69
USP28-208ENST00000540438 NEBP20929 6669 aa4.49□□□□□ -1.69
USP28-208ENST00000540438 KRTAP4-6Q9BYQ5 205 aa4.43□□□□□ -1.7
USP28-208ENST00000540438 MT3P25713 68 aa4.36□□□□□ -1.71
USP28-208ENST00000540438 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
USP28-208ENST00000540438 KRTAP5-4Q6L8H1 288 aa4.15□□□□□ -1.74
USP28-208ENST00000540438 KRTAP20-2Q3LI61 65 aa4.09□□□□□ -1.75
USP28-208ENST00000540438 LCE1DQ5T752 114 aa4.08□□□□□ -1.76
USP28-208ENST00000540438 MUC5ACP98088 5654 aa3.92□□□□□ -1.78
USP28-208ENST00000540438 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
USP28-208ENST00000540438 LCE4AQ5TA78 99 aa3.89□□□□□ -1.79
USP28-208ENST00000540438 KRTAP2-2Q9BYT5 123 aa3.87□□□□□ -1.79
USP28-208ENST00000540438 KRTAP5-2Q701N4 177 aa3.84□□□□□ -1.79
USP28-208ENST00000540438 KRTAP5-3Q6L8H2 238 aa3.8□□□□□ -1.8
USP28-208ENST00000540438 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
USP28-208ENST00000540438 MUC19Q7Z5P9 8384 aa3.6□□□□□ -1.83
USP28-208ENST00000540438 KRTAP4-11Q9BYQ6 195 aa3.53□□□□□ -1.84
USP28-208ENST00000540438 AHNAK2Q8IVF2 5795 aa3.48□□□□□ -1.85
USP28-208ENST00000540438 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
USP28-208ENST00000540438 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
USP28-208ENST00000540438 KRTAP5-1Q6L8H4 278 aa3.42□□□□□ -1.86
USP28-208ENST00000540438 KRTAP5-10Q6L8G5 202 aa3.41□□□□□ -1.86
USP28-208ENST00000540438 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
USP28-208ENST00000540438 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
USP28-208ENST00000540438 LCE1CQ5T751 118 aa3.27□□□□□ -1.89
USP28-208ENST00000540438 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
USP28-208ENST00000540438 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
USP28-208ENST00000540438 KRTAP21-2Q3LI59 83 aa3.19□□□□□ -1.9
USP28-208ENST00000540438 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
USP28-208ENST00000540438 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
USP28-208ENST00000540438 KRTAP5-7Q6L8G8 165 aa2.88□□□□□ -1.95
USP28-208ENST00000540438 KRTAP5-11Q6L8G4 156 aa2.79□□□□□ -1.96
USP28-208ENST00000540438 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
USP28-208ENST00000540438 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
USP28-208ENST00000540438 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
USP28-208ENST00000540438 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
USP28-208ENST00000540438 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
USP28-208ENST00000540438 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 104.6 ms