RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	SYNE2	Q8WXH0	6885 aa	Known RBP	5.37	□□□□□ -1.55
NR1H3-231	ENST00000529540	SPRR2F	Q96RM1	72 aa		5.36	□□□□□ -1.55
NR1H3-231	ENST00000529540	KRTAP19-5	Q3LI72	72 aa		5.32	□□□□□ -1.56
NR1H3-231	ENST00000529540	KRTAP19-7	Q3SYF9	63 aa		5.32	□□□□□ -1.56
NR1H3-231	ENST00000529540	MT1E	P04732	61 aa		5.26	□□□□□ -1.57
NR1H3-231	ENST00000529540	LCE3C	Q5T5A8	94 aa		5.22	□□□□□ -1.57
NR1H3-231	ENST00000529540	KRTAP19-4	Q3LI73	84 aa		5.16	□□□□□ -1.58
NR1H3-231	ENST00000529540	SPRR2E	P22531	72 aa		5.15	□□□□□ -1.58
NR1H3-231	ENST00000529540	SPRR2B	P35325	72 aa		5.15	□□□□□ -1.58
NR1H3-231	ENST00000529540	SPRR2A	P35326	72 aa		5.15	□□□□□ -1.58
NR1H3-231	ENST00000529540	LCE1A	Q5T7P2	110 aa		5.14	□□□□□ -1.59
NR1H3-231	ENST00000529540	KRTAP19-3	Q7Z4W3	81 aa		5.14	□□□□□ -1.59
NR1H3-231	ENST00000529540	MT1L	Q93083	61 aa		5.12	□□□□□ -1.59
NR1H3-231	ENST00000529540	MUC12	Q9UKN1	5478 aa		5.1	□□□□□ -1.59
NR1H3-231	ENST00000529540	MT1G	P13640	62 aa		5.1	□□□□□ -1.59
NR1H3-231	ENST00000529540	LCE5A	Q5TCM9	118 aa		5.07	□□□□□ -1.6
NR1H3-231	ENST00000529540	MDN1	Q9NU22	5596 aa		5.03	□□□□□ -1.6
NR1H3-231	ENST00000529540	KRTAP9-6	A8MVA2	160 aa		5.01	□□□□□ -1.61
NR1H3-231	ENST00000529540	KRTAP2-3	P0C7H8	128 aa		4.99	□□□□□ -1.61
NR1H3-231	ENST00000529540	KRTAP2-4	Q9BYR9	128 aa		4.99	□□□□□ -1.61
NR1H3-231	ENST00000529540	KRTAP2-1	Q9BYU5	128 aa		4.99	□□□□□ -1.61
NR1H3-231	ENST00000529540	SPRR2D	P22532	72 aa		4.99	□□□□□ -1.61
NR1H3-231	ENST00000529540	MT1M	Q8N339	61 aa		4.97	□□□□□ -1.61
NR1H3-231	ENST00000529540	NEB	P20929	6669 aa		4.96	□□□□□ -1.62
NR1H3-231	ENST00000529540	KRTAP4-7	Q9BYR0	210 aa		4.82	□□□□□ -1.64
NR1H3-231	ENST00000529540	KRTAP20-1	Q3LI63	56 aa		4.8	□□□□□ -1.64
NR1H3-231	ENST00000529540	LCE3B	Q5TA77	95 aa		4.8	□□□□□ -1.64
NR1H3-231	ENST00000529540	KRTAP4-3	Q9BYR4	195 aa		4.76	□□□□□ -1.65
NR1H3-231	ENST00000529540	DST	Q03001	7570 aa	Known RBP	4.7	□□□□□ -1.66
NR1H3-231	ENST00000529540	KRTAP2-2	Q9BYT5	123 aa		4.7	□□□□□ -1.66
NR1H3-231	ENST00000529540	LOC100996750	A0A140TA64	210 aa		4.54	□□□□□ -1.68
NR1H3-231	ENST00000529540	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.51	□□□□□ -1.69
NR1H3-231	ENST00000529540	LCE4A	Q5TA78	99 aa		4.48	□□□□□ -1.69
NR1H3-231	ENST00000529540	KRTAP5-4	Q6L8H1	288 aa		4.45	□□□□□ -1.7
NR1H3-231	ENST00000529540	MT1A	P04731	61 aa		4.38	□□□□□ -1.71
NR1H3-231	ENST00000529540	KRTAP12-4	P60329	112 aa		4.35	□□□□□ -1.71
NR1H3-231	ENST00000529540	MT4	P47944	62 aa		4.29	□□□□□ -1.72
NR1H3-231	ENST00000529540	KRTAP6-1	Q3LI64	71 aa		4.28	□□□□□ -1.72
NR1H3-231	ENST00000529540	LCE1D	Q5T752	114 aa		4.27	□□□□□ -1.73
NR1H3-231	ENST00000529540	KRTAP4-9	Q9BYQ8	210 aa		4.27	□□□□□ -1.73
NR1H3-231	ENST00000529540	GPR98	Q8WXG9	6306 aa		4.25	□□□□□ -1.73
NR1H3-231	ENST00000529540	KRTAP4-6	Q9BYQ5	205 aa		4.19	□□□□□ -1.74
NR1H3-231	ENST00000529540	SYNE1	Q8NF91	8797 aa	Known RBP	4.19	□□□□□ -1.74
NR1H3-231	ENST00000529540	KRTAP9-4	Q9BYQ2	154 aa		4.18	□□□□□ -1.74
NR1H3-231	ENST00000529540	KRTAP20-2	Q3LI61	65 aa		4.16	□□□□□ -1.74
NR1H3-231	ENST00000529540	HMCN1	Q96RW7	5635 aa		4.12	□□□□□ -1.75
NR1H3-231	ENST00000529540	LCE3D	Q9BYE3	92 aa		4.03	□□□□□ -1.76
NR1H3-231	ENST00000529540	LCE3E	Q5T5B0	92 aa		4.02	□□□□□ -1.77
NR1H3-231	ENST00000529540	MT3	P25713	68 aa		4.01	□□□□□ -1.77
NR1H3-231	ENST00000529540	KRTAP5-3	Q6L8H2	238 aa		4	□□□□□ -1.77
NR1H3-231	ENST00000529540	KRTAP6-2	Q3LI66	62 aa		4	□□□□□ -1.77
NR1H3-231	ENST00000529540	KRTAP5-2	Q701N4	177 aa		3.99	□□□□□ -1.77
NR1H3-231	ENST00000529540	PRM1	P04553	51 aa		3.88	□□□□□ -1.79
NR1H3-231	ENST00000529540	AHNAK2	Q8IVF2	5795 aa		3.82	□□□□□ -1.8
NR1H3-231	ENST00000529540	KRTAP5-10	Q6L8G5	202 aa		3.76	□□□□□ -1.81
NR1H3-231	ENST00000529540	KRTAP5-7	Q6L8G8	165 aa		3.68	□□□□□ -1.82
NR1H3-231	ENST00000529540	KRTAP4-11	Q9BYQ6	195 aa		3.68	□□□□□ -1.82
NR1H3-231	ENST00000529540	OBSCN	Q5VST9	7968 aa		3.59	□□□□□ -1.83
NR1H3-231	ENST00000529540	LCE1E	Q5T753	118 aa		3.57	□□□□□ -1.84
NR1H3-231	ENST00000529540	KRTAP5-8	O75690	187 aa		3.52	□□□□□ -1.85
NR1H3-231	ENST00000529540	KRTAP5-1	Q6L8H4	278 aa		3.46	□□□□□ -1.85
NR1H3-231	ENST00000529540	LCE1C	Q5T751	118 aa		3.3	□□□□□ -1.88
NR1H3-231	ENST00000529540	LCE1B	Q5T7P3	118 aa		3.3	□□□□□ -1.88
NR1H3-231	ENST00000529540	KRTAP9-9	Q9BYP9	154 aa		3.29	□□□□□ -1.88
NR1H3-231	ENST00000529540	AHNAK	Q09666	5890 aa	Known RBP	3.28	□□□□□ -1.88
NR1H3-231	ENST00000529540	KRTAP4-2	Q9BYR5	136 aa		3.26	□□□□□ -1.89
NR1H3-231	ENST00000529540	MUC5AC	P98088	5654 aa		3.25	□□□□□ -1.89
NR1H3-231	ENST00000529540	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.22	□□□□□ -1.89
NR1H3-231	ENST00000529540	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.08	□□□□□ -1.92
NR1H3-231	ENST00000529540	KRTAP5-11	Q6L8G4	156 aa		2.95	□□□□□ -1.94
NR1H3-231	ENST00000529540	KRTAP21-2	Q3LI59	83 aa		2.82	□□□□□ -1.96
NR1H3-231	ENST00000529540	LCE1F	Q5T754	118 aa		2.77	□□□□□ -1.97
NR1H3-231	ENST00000529540	KRTAP4-12	Q9BQ66	201 aa		2.72	□□□□□ -1.97
NR1H3-231	ENST00000529540	KRTAP21-1	Q3LI58	79 aa		2.53	□□□□□ -2
NR1H3-231	ENST00000529540	PHGR1	C9JFL3	82 aa		2.51	□□□□□ -2.01
NR1H3-231	ENST00000529540	KRTAP4-4	Q9BYR3	166 aa		2.45	□□□□□ -2.02
NR1H3-231	ENST00000529540	MUC19	Q7Z5P9	8384 aa		2.17	□□□□□ -2.06
NR1H3-231	ENST00000529540	MUC16	Q8WXI7	14507 aa		1.57	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 102.5 ms