RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 LRP1Q07954 4544 aaKnown RBP2.32□□□□□ -2.04
CD44-230ENST00000528922 A0A0D9SG42 100 aa2.31□□□□□ -2.04
CD44-230ENST00000528922 R4GN34 69 aa2.29□□□□□ -2.04
CD44-230ENST00000528922 TNXBP22105 4242 aa2.29□□□□□ -2.04
CD44-230ENST00000528922 P0C880 135 aa2.27□□□□□ -2.05
CD44-230ENST00000528922 KRTAP12-1P59990 96 aa2.26□□□□□ -2.05
CD44-230ENST00000528922 KRTAP13-4Q3LI77 160 aa2.26□□□□□ -2.05
CD44-230ENST00000528922 KRTAP20-1Q3LI63 56 aa2.25□□□□□ -2.05
CD44-230ENST00000528922 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
CD44-230ENST00000528922 LPAP08519 4548 aa2.24□□□□□ -2.05
CD44-230ENST00000528922 SYNE2Q8WXH0 6885 aaKnown RBP2.23□□□□□ -2.05
CD44-230ENST00000528922 MT1HL1P0DM35 61 aa2.23□□□□□ -2.05
CD44-230ENST00000528922 LUZP6Q538Z0 58 aa2.2□□□□□ -2.06
CD44-230ENST00000528922 SSPOA2VEC9 5147 aa2.2□□□□□ -2.06
CD44-230ENST00000528922 MACF1Q9UPN3 7388 aaKnown RBP2.19□□□□□ -2.06
CD44-230ENST00000528922 NEBP20929 6669 aa2.19□□□□□ -2.06
CD44-230ENST00000528922 PLAC4Q8WY50 150 aa2.17□□□□□ -2.06
CD44-230ENST00000528922 C10orf95Q9H7T3 257 aa2.17□□□□□ -2.06
CD44-230ENST00000528922 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
CD44-230ENST00000528922 TNP1P09430 55 aa2.14□□□□□ -2.07
CD44-230ENST00000528922 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CD44-230ENST00000528922 KRTAP6-3Q3LI67 103 aa2.11□□□□□ -2.07
CD44-230ENST00000528922 GPR98Q8WXG9 6306 aa2.1□□□□□ -2.07
CD44-230ENST00000528922 USH2AO75445 5202 aa2.09□□□□□ -2.07
CD44-230ENST00000528922 KRTAP12-3P60328 96 aa2.09□□□□□ -2.08
CD44-230ENST00000528922 FCGBPQ9Y6R7 5405 aaPredicted RBP2.08□□□□□ -2.08
CD44-230ENST00000528922 KRTAP12-4P60329 112 aa2.04□□□□□ -2.08
CD44-230ENST00000528922 M0R2T5 61 aa2.02□□□□□ -2.09
CD44-230ENST00000528922 KRTAP2-3P0C7H8 128 aa2.02□□□□□ -2.09
CD44-230ENST00000528922 KRTAP2-4Q9BYR9 128 aa2.02□□□□□ -2.09
CD44-230ENST00000528922 KRTAP19-2Q3LHN2 52 aa2.01□□□□□ -2.09
CD44-230ENST00000528922 MUC17Q685J3 4493 aa2□□□□□ -2.09
CD44-230ENST00000528922 SPRR2GQ9BYE4 73 aa2□□□□□ -2.09
CD44-230ENST00000528922 KRTAP4-1Q9BYQ7 146 aa1.99□□□□□ -2.09
CD44-230ENST00000528922 FLGP20930 4061 aaPredicted RBP1.99□□□□□ -2.09
CD44-230ENST00000528922 MUC12Q9UKN1 5478 aa1.99□□□□□ -2.09
CD44-230ENST00000528922 MT1HP80294 61 aa1.95□□□□□ -2.1
CD44-230ENST00000528922 INE1O15225 51 aa1.93□□□□□ -2.1
CD44-230ENST00000528922 PRO2289Q9P1D8 64 aa1.93□□□□□ -2.1
CD44-230ENST00000528922 KMT2DO14686 5537 aa1.93□□□□□ -2.1
CD44-230ENST00000528922 KRTAP2-1Q9BYU5 128 aa1.92□□□□□ -2.1
CD44-230ENST00000528922 KRTAP19-8Q3LI54 63 aa1.91□□□□□ -2.1
CD44-230ENST00000528922 KRTAP8-1Q8IUC2 63 aa1.91□□□□□ -2.1
CD44-230ENST00000528922 MT2AP02795 61 aa1.84□□□□□ -2.12
CD44-230ENST00000528922 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
CD44-230ENST00000528922 KRTAP19-6Q3LI70 58 aa1.83□□□□□ -2.12
CD44-230ENST00000528922 MDN1Q9NU22 5596 aa1.82□□□□□ -2.12
CD44-230ENST00000528922 MT1FP04733 61 aa1.81□□□□□ -2.12
CD44-230ENST00000528922 SPRR2EP22531 72 aa1.79□□□□□ -2.12
CD44-230ENST00000528922 SPRR2BP35325 72 aa1.79□□□□□ -2.12
CD44-230ENST00000528922 SPRR2AP35326 72 aa1.79□□□□□ -2.12
CD44-230ENST00000528922 MT1BP07438 61 aa1.78□□□□□ -2.12
CD44-230ENST00000528922 MT1XP80297 61 aa1.78□□□□□ -2.12
CD44-230ENST00000528922 AHNAK2Q8IVF2 5795 aa1.74□□□□□ -2.13
CD44-230ENST00000528922 SPRR2DP22532 72 aa1.74□□□□□ -2.13
CD44-230ENST00000528922 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
CD44-230ENST00000528922 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
CD44-230ENST00000528922 SPRR2FQ96RM1 72 aa1.68□□□□□ -2.14
CD44-230ENST00000528922 KRTAP19-5Q3LI72 72 aa1.67□□□□□ -2.14
CD44-230ENST00000528922 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
CD44-230ENST00000528922 MT1EP04732 61 aa1.59□□□□□ -2.16
CD44-230ENST00000528922 KRTAP19-7Q3SYF9 63 aa1.58□□□□□ -2.16
CD44-230ENST00000528922 MT1LQ93083 61 aa1.58□□□□□ -2.16
CD44-230ENST00000528922 MT4P47944 62 aa1.57□□□□□ -2.16
CD44-230ENST00000528922 MT1GP13640 62 aa1.55□□□□□ -2.16
CD44-230ENST00000528922 MUC5BQ9HC84 5762 aaPredicted RBP1.54□□□□□ -2.16
CD44-230ENST00000528922 KRTAP19-3Q7Z4W3 81 aa1.49□□□□□ -2.17
CD44-230ENST00000528922 MUC5ACP98088 5654 aa1.48□□□□□ -2.17
CD44-230ENST00000528922 MT1MQ8N339 61 aa1.46□□□□□ -2.18
CD44-230ENST00000528922 MT1AP04731 61 aa1.45□□□□□ -2.18
CD44-230ENST00000528922 KRTAP6-1Q3LI64 71 aa1.29□□□□□ -2.2
CD44-230ENST00000528922 KRTAP20-2Q3LI61 65 aa1.28□□□□□ -2.2
CD44-230ENST00000528922 SYNE1Q8NF91 8797 aaKnown RBP1.25□□□□□ -2.21
CD44-230ENST00000528922 PRM1P04553 51 aa1.23□□□□□ -2.21
CD44-230ENST00000528922 KRTAP6-2Q3LI66 62 aa1.18□□□□□ -2.22
CD44-230ENST00000528922 PHGR1C9JFL3 82 aa1.09□□□□□ -2.24
CD44-230ENST00000528922 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
CD44-230ENST00000528922 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 62.1 ms