RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KRTAP20-2Q3LI61 65 aa7.89□□□□□ -1.15
CPSF1-202ENST00000527827 K7ERU9 68 aa7.88□□□□□ -1.15
CPSF1-202ENST00000527827 SMIM26A0A096LP01 95 aa7.84□□□□□ -1.15
CPSF1-202ENST00000527827 A8MU10 97 aa7.83□□□□□ -1.16
CPSF1-202ENST00000527827 KRTAP5-5Q701N2 237 aaPredicted RBP7.8□□□□□ -1.16
CPSF1-202ENST00000527827 SPRR5A0A1B0GTR4 108 aa7.78□□□□□ -1.16
CPSF1-202ENST00000527827 KRTAP12-3P60328 96 aa7.74□□□□□ -1.17
CPSF1-202ENST00000527827 A0A1B0GU69 56 aa7.7□□□□□ -1.18
CPSF1-202ENST00000527827 KRTAP12-4P60329 112 aa7.66□□□□□ -1.18
CPSF1-202ENST00000527827 H7BZZ5 65 aa7.6□□□□□ -1.19
CPSF1-202ENST00000527827 SYNE1Q8NF91 8797 aaKnown RBP7.57□□□□□ -1.2
CPSF1-202ENST00000527827 COX7CP15954 63 aa7.56□□□□□ -1.2
CPSF1-202ENST00000527827 LOC100996750A0A140TA64 210 aa7.54□□□□□ -1.2
CPSF1-202ENST00000527827 KRTAP4-11Q9BYQ6 195 aa7.32□□□□□ -1.24
CPSF1-202ENST00000527827 PRR15LQ9BU68 103 aa7.28□□□□□ -1.24
CPSF1-202ENST00000527827 KRTAP19-4Q3LI73 84 aa7.24□□□□□ -1.25
CPSF1-202ENST00000527827 KRTAP5-2Q701N4 177 aa7.22□□□□□ -1.25
CPSF1-202ENST00000527827 KRTAP25-1Q3LHN0 102 aa7.21□□□□□ -1.26
CPSF1-202ENST00000527827 LINC01558Q9Y6Z2 57 aa7.15□□□□□ -1.26
CPSF1-202ENST00000527827 KRTAP5-8O75690 187 aa7.11□□□□□ -1.27
CPSF1-202ENST00000527827 MT1AP04731 61 aa7.09□□□□□ -1.27
CPSF1-202ENST00000527827 KRTAP6-1Q3LI64 71 aa7.09□□□□□ -1.27
CPSF1-202ENST00000527827 LCE3CQ5T5A8 94 aa7.09□□□□□ -1.27
CPSF1-202ENST00000527827 KRTAP15-1Q3LI76 137 aa7.06□□□□□ -1.28
CPSF1-202ENST00000527827 UQCR11O14957 56 aa7.05□□□□□ -1.28
CPSF1-202ENST00000527827 ANAPC13Q9BS18 74 aa7.05□□□□□ -1.28
CPSF1-202ENST00000527827 MUC5ACP98088 5654 aa7.03□□□□□ -1.28
CPSF1-202ENST00000527827 AHNAKQ09666 5890 aaKnown RBP7.03□□□□□ -1.28
CPSF1-202ENST00000527827 MUC5BQ9HC84 5762 aaPredicted RBP6.99□□□□□ -1.29
CPSF1-202ENST00000527827 ATP5EP56381 51 aaPredicted RBP6.94□□□□□ -1.3
CPSF1-202ENST00000527827 KRTAP23-1A1A580 65 aa6.91□□□□□ -1.3
CPSF1-202ENST00000527827 CCDC179H3BU77 68 aa6.91□□□□□ -1.3
CPSF1-202ENST00000527827 KRTAP9-4Q9BYQ2 154 aa6.9□□□□□ -1.3
CPSF1-202ENST00000527827 MIR22HGQ0VDD5 57 aa6.86□□□□□ -1.31
CPSF1-202ENST00000527827 KRTAP6-2Q3LI66 62 aa6.86□□□□□ -1.31
CPSF1-202ENST00000527827 OBSCNQ5VST9 7968 aa6.79□□□□□ -1.32
CPSF1-202ENST00000527827 KRTAP9-9Q9BYP9 154 aa6.79□□□□□ -1.32
CPSF1-202ENST00000527827 K7ERS5 55 aa6.78□□□□□ -1.32
CPSF1-202ENST00000527827 KRTAP9-6A8MVA2 160 aa6.75□□□□□ -1.33
CPSF1-202ENST00000527827 TMEM258P61165 79 aa6.68□□□□□ -1.34
CPSF1-202ENST00000527827 KRTAP5-1Q6L8H4 278 aa6.57□□□□□ -1.36
CPSF1-202ENST00000527827 MT3P25713 68 aa6.49□□□□□ -1.37
CPSF1-202ENST00000527827 PSPHP1O15172 72 aa6.44□□□□□ -1.38
CPSF1-202ENST00000527827 RPS28P62857 69 aaKnown RBP6.4□□□□□ -1.38
CPSF1-202ENST00000527827 Q1T7F1 81 aa6.39□□□□□ -1.39
CPSF1-202ENST00000527827 CDC42SE1Q9NRR8 79 aa6.38□□□□□ -1.39
CPSF1-202ENST00000527827 PCP4P48539 62 aa6.33□□□□□ -1.4
CPSF1-202ENST00000527827 V9GYY9 64 aa6.32□□□□□ -1.4
CPSF1-202ENST00000527827 ROMO1P60602 79 aa6.26□□□□□ -1.41
CPSF1-202ENST00000527827 A6NED7 52 aa6.16□□□□□ -1.42
CPSF1-202ENST00000527827 LCE1EQ5T753 118 aa6.08□□□□□ -1.44
CPSF1-202ENST00000527827 KRTAP4-2Q9BYR5 136 aa5.83□□□□□ -1.48
CPSF1-202ENST00000527827 LCE1BQ5T7P3 118 aa5.77□□□□□ -1.49
CPSF1-202ENST00000527827 LCE1CQ5T751 118 aa5.66□□□□□ -1.5
CPSF1-202ENST00000527827 BRK1Q8WUW1 75 aa5.47□□□□□ -1.53
CPSF1-202ENST00000527827 KRTAP4-12Q9BQ66 201 aa5.46□□□□□ -1.54
CPSF1-202ENST00000527827 KRTAP5-11Q6L8G4 156 aa5.18□□□□□ -1.58
CPSF1-202ENST00000527827 LCE1FQ5T754 118 aa5.12□□□□□ -1.59
CPSF1-202ENST00000527827 PMAIP1Q13794 54 aa5.1□□□□□ -1.59
CPSF1-202ENST00000527827 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.09□□□□□ -1.59
CPSF1-202ENST00000527827 LCE3DQ9BYE3 92 aa4.99□□□□□ -1.61
CPSF1-202ENST00000527827 PRO0628Q9UI54 55 aa4.99□□□□□ -1.61
CPSF1-202ENST00000527827 PRAC1Q96KF2 57 aa4.88□□□□□ -1.63
CPSF1-202ENST00000527827 PHGR1C9JFL3 82 aa4.87□□□□□ -1.63
CPSF1-202ENST00000527827 KTN1-AS1Q86SY8 53 aa4.74□□□□□ -1.65
CPSF1-202ENST00000527827 KRTAP21-2Q3LI59 83 aa4.69□□□□□ -1.66
CPSF1-202ENST00000527827 LCE3EQ5T5B0 92 aa4.61□□□□□ -1.67
CPSF1-202ENST00000527827 SVIPQ8NHG7 77 aa4.55□□□□□ -1.68
CPSF1-202ENST00000527827 KRTAP4-4Q9BYR3 166 aa4.37□□□□□ -1.71
CPSF1-202ENST00000527827 MUC19Q7Z5P9 8384 aa4.22□□□□□ -1.73
CPSF1-202ENST00000527827 LUZP6Q538Z0 58 aa4.09□□□□□ -1.75
CPSF1-202ENST00000527827 KRTAP21-1Q3LI58 79 aa3.69□□□□□ -1.82
CPSF1-202ENST00000527827 NDUFAF8A1L188 74 aa3.53□□□□□ -1.84
CPSF1-202ENST00000527827 PRM1P04553 51 aa3.18□□□□□ -1.9
CPSF1-202ENST00000527827 MUC16Q8WXI7 14507 aa3□□□□□ -1.93
CPSF1-202ENST00000527827 A0A0A0MQY5 61 aa2.94□□□□□ -1.94
CPSF1-202ENST00000527827 INE1O15225 51 aa2.89□□□□□ -1.95
CPSF1-202ENST00000527827 H3BS24 57 aa2.64□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 13 ms