RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 V9GYY9 64 aa7.25□□□□□ -1.25
VPS28-206ENST00000526734 K7ERS5 55 aa7.2□□□□□ -1.26
VPS28-206ENST00000526734 KRTAP12-3P60328 96 aa7.16□□□□□ -1.26
VPS28-206ENST00000526734 KRTAP25-1Q3LHN0 102 aa7.15□□□□□ -1.26
VPS28-206ENST00000526734 Q1T7F1 81 aa7.14□□□□□ -1.27
VPS28-206ENST00000526734 KRTAP4-9Q9BYQ8 210 aa7.13□□□□□ -1.27
VPS28-206ENST00000526734 LCE4AQ5TA78 99 aa7.12□□□□□ -1.27
VPS28-206ENST00000526734 PSPHP1O15172 72 aa7.09□□□□□ -1.27
VPS28-206ENST00000526734 KRTAP4-3Q9BYR4 195 aa7.04□□□□□ -1.28
VPS28-206ENST00000526734 LCE1DQ5T752 114 aa7.03□□□□□ -1.28
VPS28-206ENST00000526734 GPR98Q8WXG9 6306 aa7.03□□□□□ -1.28
VPS28-206ENST00000526734 KRTAP5-4Q6L8H1 288 aa6.96□□□□□ -1.3
VPS28-206ENST00000526734 HMCN1Q96RW7 5635 aa6.94□□□□□ -1.3
VPS28-206ENST00000526734 MT4P47944 62 aa6.93□□□□□ -1.3
VPS28-206ENST00000526734 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
VPS28-206ENST00000526734 A6NED7 52 aa6.91□□□□□ -1.3
VPS28-206ENST00000526734 KRTAP19-4Q3LI73 84 aa6.9□□□□□ -1.3
VPS28-206ENST00000526734 KRTAP4-7Q9BYR0 210 aa6.9□□□□□ -1.3
VPS28-206ENST00000526734 RPS28P62857 69 aaKnown RBP6.8□□□□□ -1.32
VPS28-206ENST00000526734 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
VPS28-206ENST00000526734 KRTAP4-6Q9BYQ5 205 aa6.73□□□□□ -1.33
VPS28-206ENST00000526734 KRTAP15-1Q3LI76 137 aa6.72□□□□□ -1.33
VPS28-206ENST00000526734 KRTAP5-5Q701N2 237 aaPredicted RBP6.7□□□□□ -1.34
VPS28-206ENST00000526734 AHNAK2Q8IVF2 5795 aa6.69□□□□□ -1.34
VPS28-206ENST00000526734 ROMO1P60602 79 aa6.65□□□□□ -1.34
VPS28-206ENST00000526734 PCP4P48539 62 aa6.64□□□□□ -1.35
VPS28-206ENST00000526734 SPRR5A0A1B0GTR4 108 aa6.59□□□□□ -1.35
VPS28-206ENST00000526734 LCE3CQ5T5A8 94 aa6.59□□□□□ -1.35
VPS28-206ENST00000526734 KRTAP12-4P60329 112 aa6.56□□□□□ -1.36
VPS28-206ENST00000526734 KRTAP20-2Q3LI61 65 aa6.55□□□□□ -1.36
VPS28-206ENST00000526734 LOC100996750A0A140TA64 210 aa6.53□□□□□ -1.36
VPS28-206ENST00000526734 KRTAP5-10Q6L8G5 202 aa6.52□□□□□ -1.37
VPS28-206ENST00000526734 KRTAP5-3Q6L8H2 238 aa6.39□□□□□ -1.39
VPS28-206ENST00000526734 SYNE1Q8NF91 8797 aaKnown RBP6.39□□□□□ -1.39
VPS28-206ENST00000526734 MT1AP04731 61 aa6.29□□□□□ -1.4
VPS28-206ENST00000526734 KRTAP5-7Q6L8G8 165 aa6.29□□□□□ -1.4
VPS28-206ENST00000526734 KRTAP6-1Q3LI64 71 aa6.18□□□□□ -1.42
VPS28-206ENST00000526734 KRTAP9-6A8MVA2 160 aa6.14□□□□□ -1.43
VPS28-206ENST00000526734 KRTAP5-2Q701N4 177 aa6.11□□□□□ -1.43
VPS28-206ENST00000526734 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
VPS28-206ENST00000526734 KRTAP4-11Q9BYQ6 195 aa5.97□□□□□ -1.45
VPS28-206ENST00000526734 BRK1Q8WUW1 75 aa5.93□□□□□ -1.46
VPS28-206ENST00000526734 KRTAP6-2Q3LI66 62 aa5.9□□□□□ -1.46
VPS28-206ENST00000526734 KRTAP5-8O75690 187 aa5.76□□□□□ -1.49
VPS28-206ENST00000526734 MT3P25713 68 aa5.76□□□□□ -1.49
VPS28-206ENST00000526734 OBSCNQ5VST9 7968 aa5.64□□□□□ -1.51
VPS28-206ENST00000526734 PMAIP1Q13794 54 aa5.58□□□□□ -1.52
VPS28-206ENST00000526734 AHNAKQ09666 5890 aaKnown RBP5.55□□□□□ -1.52
VPS28-206ENST00000526734 MUC5ACP98088 5654 aa5.51□□□□□ -1.53
VPS28-206ENST00000526734 MUC5BQ9HC84 5762 aaPredicted RBP5.5□□□□□ -1.53
VPS28-206ENST00000526734 KRTAP9-9Q9BYP9 154 aa5.49□□□□□ -1.53
VPS28-206ENST00000526734 KRTAP5-1Q6L8H4 278 aa5.44□□□□□ -1.54
VPS28-206ENST00000526734 PRAC1Q96KF2 57 aa5.31□□□□□ -1.56
VPS28-206ENST00000526734 LCE1EQ5T753 118 aa5.3□□□□□ -1.56
VPS28-206ENST00000526734 PRO0628Q9UI54 55 aa5.17□□□□□ -1.58
VPS28-206ENST00000526734 KTN1-AS1Q86SY8 53 aa4.96□□□□□ -1.62
VPS28-206ENST00000526734 KRTAP4-2Q9BYR5 136 aa4.94□□□□□ -1.62
VPS28-206ENST00000526734 LCE1CQ5T751 118 aa4.9□□□□□ -1.63
VPS28-206ENST00000526734 LCE1BQ5T7P3 118 aa4.9□□□□□ -1.63
VPS28-206ENST00000526734 LCE3DQ9BYE3 92 aa4.77□□□□□ -1.65
VPS28-206ENST00000526734 SVIPQ8NHG7 77 aa4.75□□□□□ -1.65
VPS28-206ENST00000526734 LUZP6Q538Z0 58 aa4.62□□□□□ -1.67
VPS28-206ENST00000526734 LCE3EQ5T5B0 92 aa4.5□□□□□ -1.69
VPS28-206ENST00000526734 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.48□□□□□ -1.69
VPS28-206ENST00000526734 KRTAP5-11Q6L8G4 156 aa4.45□□□□□ -1.7
VPS28-206ENST00000526734 KRTAP4-12Q9BQ66 201 aa4.39□□□□□ -1.71
VPS28-206ENST00000526734 LCE1FQ5T754 118 aa4.34□□□□□ -1.71
VPS28-206ENST00000526734 KRTAP21-2Q3LI59 83 aa4.08□□□□□ -1.76
VPS28-206ENST00000526734 PHGR1C9JFL3 82 aa3.82□□□□□ -1.8
VPS28-206ENST00000526734 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
VPS28-206ENST00000526734 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
VPS28-206ENST00000526734 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.85
VPS28-206ENST00000526734 PRM1P04553 51 aa3.36□□□□□ -1.87
VPS28-206ENST00000526734 H3BS24 57 aa3.16□□□□□ -1.9
VPS28-206ENST00000526734 INE1O15225 51 aa2.96□□□□□ -1.94
VPS28-206ENST00000526734 KRTAP21-1Q3LI58 79 aa2.93□□□□□ -1.94
VPS28-206ENST00000526734 A0A0A0MQY5 61 aa2.87□□□□□ -1.95
VPS28-206ENST00000526734 MUC16Q8WXI7 14507 aa2.51□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms