RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 HSPG2P98160 4391 aa1.16□□□□□ -2.22
USP47-204ENST00000525078 MT1HL1P0DM35 61 aa1.14□□□□□ -2.23
USP47-204ENST00000525078 MYCBP2O75592 4640 aa1.13□□□□□ -2.23
USP47-204ENST00000525078 DYNC1H1Q14204 4646 aaKnown RBP1.13□□□□□ -2.23
USP47-204ENST00000525078 SMR3BP02814 79 aaPredicted RBP1.13□□□□□ -2.23
USP47-204ENST00000525078 FAT3Q8TDW7 4589 aa1.13□□□□□ -2.23
USP47-204ENST00000525078 FAT1Q14517 4588 aa1.12□□□□□ -2.23
USP47-204ENST00000525078 KRTAP8-1Q8IUC2 63 aa1.12□□□□□ -2.23
USP47-204ENST00000525078 KRTAP19-2Q3LHN2 52 aa1.11□□□□□ -2.23
USP47-204ENST00000525078 FLGP20930 4061 aaPredicted RBP1.1□□□□□ -2.23
USP47-204ENST00000525078 SPRR2GQ9BYE4 73 aa1.1□□□□□ -2.23
USP47-204ENST00000525078 DNHD1Q96M86 4753 aa1.08□□□□□ -2.24
USP47-204ENST00000525078 M0R2T5 61 aa1.04□□□□□ -2.24
USP47-204ENST00000525078 KRTAP19-8Q3LI54 63 aa1.04□□□□□ -2.24
USP47-204ENST00000525078 MUC17Q685J3 4493 aa1.03□□□□□ -2.24
USP47-204ENST00000525078 HYDINQ4G0P3 5121 aa1.02□□□□□ -2.25
USP47-204ENST00000525078 LRP2P98164 4655 aa1□□□□□ -2.25
USP47-204ENST00000525078 LPAP08519 4548 aa0.99□□□□□ -2.25
USP47-204ENST00000525078 HERC1Q15751 4861 aa0.99□□□□□ -2.25
USP47-204ENST00000525078 MT1XP80297 61 aa0.98□□□□□ -2.25
USP47-204ENST00000525078 RYR2Q92736 4967 aa0.98□□□□□ -2.25
USP47-204ENST00000525078 MT1BP07438 61 aa0.96□□□□□ -2.26
USP47-204ENST00000525078 KMT2CQ8NEZ4 4911 aaKnown RBP0.95□□□□□ -2.26
USP47-204ENST00000525078 KRTAP19-5Q3LI72 72 aa0.95□□□□□ -2.26
USP47-204ENST00000525078 MT2AP02795 61 aa0.94□□□□□ -2.26
USP47-204ENST00000525078 PRM1P04553 51 aa0.94□□□□□ -2.26
USP47-204ENST00000525078 RYR1P21817 5038 aa0.94□□□□□ -2.26
USP47-204ENST00000525078 MT1FP04733 61 aa0.93□□□□□ -2.26
USP47-204ENST00000525078 MT1HP80294 61 aa0.93□□□□□ -2.26
USP47-204ENST00000525078 HMCN2Q8NDA2 5059 aa0.9□□□□□ -2.27
USP47-204ENST00000525078 MT1EP04732 61 aa0.9□□□□□ -2.27
USP47-204ENST00000525078 RYR3Q15413 4870 aa0.89□□□□□ -2.27
USP47-204ENST00000525078 BIRC6Q9NR09 4857 aa0.88□□□□□ -2.27
USP47-204ENST00000525078 KRTAP19-7Q3SYF9 63 aa0.87□□□□□ -2.27
USP47-204ENST00000525078 MT1LQ93083 61 aa0.87□□□□□ -2.27
USP47-204ENST00000525078 MT1AP04731 61 aa0.86□□□□□ -2.27
USP47-204ENST00000525078 KIAA1109Q2LD37 5005 aa0.85□□□□□ -2.27
USP47-204ENST00000525078 HERC2O95714 4834 aa0.85□□□□□ -2.27
USP47-204ENST00000525078 SYNE1Q8NF91 8797 aaKnown RBP0.83□□□□□ -2.28
USP47-204ENST00000525078 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
USP47-204ENST00000525078 ABCA13Q86UQ4 5058 aa0.82□□□□□ -2.28
USP47-204ENST00000525078 PCLOQ9Y6V0 5065 aa0.82□□□□□ -2.28
USP47-204ENST00000525078 AHNAK2Q8IVF2 5795 aa0.8□□□□□ -2.28
USP47-204ENST00000525078 MT1GP13640 62 aa0.8□□□□□ -2.28
USP47-204ENST00000525078 MT1MQ8N339 61 aa0.78□□□□□ -2.28
USP47-204ENST00000525078 MUC2Q02817 5179 aa0.77□□□□□ -2.29
USP47-204ENST00000525078 SPRR2FQ96RM1 72 aa0.77□□□□□ -2.29
USP47-204ENST00000525078 SPRR2DP22532 72 aa0.76□□□□□ -2.29
USP47-204ENST00000525078 UBR4Q5T4S7 5183 aa0.75□□□□□ -2.29
USP47-204ENST00000525078 SPRR2AP35326 72 aa0.75□□□□□ -2.29
USP47-204ENST00000525078 KRTAP19-6Q3LI70 58 aa0.75□□□□□ -2.29
USP47-204ENST00000525078 EPPK1P58107 5090 aaKnown RBP0.75□□□□□ -2.29
USP47-204ENST00000525078 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
USP47-204ENST00000525078 SPRR2BP35325 72 aa0.72□□□□□ -2.29
USP47-204ENST00000525078 FAT4Q6V0I7 4981 aa0.72□□□□□ -2.29
USP47-204ENST00000525078 SPRR2EP22531 72 aa0.71□□□□□ -2.3
USP47-204ENST00000525078 KRTAP6-2Q3LI66 62 aa0.71□□□□□ -2.3
USP47-204ENST00000525078 KRTAP6-1Q3LI64 71 aa0.7□□□□□ -2.3
USP47-204ENST00000525078 KRTAP5-10Q6L8G5 202 aa0.7□□□□□ -2.3
USP47-204ENST00000525078 GPR98Q8WXG9 6306 aa0.69□□□□□ -2.3
USP47-204ENST00000525078 SSPOA2VEC9 5147 aa0.67□□□□□ -2.3
USP47-204ENST00000525078 RNF213Q63HN8 5207 aa0.65□□□□□ -2.31
USP47-204ENST00000525078 USH2AO75445 5202 aa0.62□□□□□ -2.31
USP47-204ENST00000525078 KMT2DO14686 5537 aa0.6□□□□□ -2.31
USP47-204ENST00000525078 MUC5BQ9HC84 5762 aaPredicted RBP0.57□□□□□ -2.32
USP47-204ENST00000525078 PHGR1C9JFL3 82 aa0.56□□□□□ -2.32
USP47-204ENST00000525078 AHNAKQ09666 5890 aaKnown RBP0.55□□□□□ -2.32
USP47-204ENST00000525078 MACF1Q9UPN3 7388 aaKnown RBP0.51□□□□□ -2.33
USP47-204ENST00000525078 MUC12Q9UKN1 5478 aa0.51□□□□□ -2.33
USP47-204ENST00000525078 KRTAP20-2Q3LI61 65 aa0.5□□□□□ -2.33
USP47-204ENST00000525078 KRTAP20-1Q3LI63 56 aa0.48□□□□□ -2.33
USP47-204ENST00000525078 MDN1Q9NU22 5596 aa0.46□□□□□ -2.34
USP47-204ENST00000525078 MUC5ACP98088 5654 aa0.46□□□□□ -2.34
USP47-204ENST00000525078 DSTQ03001 7570 aaKnown RBP0.46□□□□□ -2.34
USP47-204ENST00000525078 MT4P47944 62 aa0.4□□□□□ -2.35
USP47-204ENST00000525078 SYNE2Q8WXH0 6885 aaKnown RBP0.39□□□□□ -2.35
USP47-204ENST00000525078 FSIP2Q5CZC0 6907 aa0.37□□□□□ -2.35
USP47-204ENST00000525078 NEBP20929 6669 aa0.29□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 80.9 ms