RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 NEBP20929 6669 aa2.88□□□□□ -1.95
SDCBP-208ENST00000520228 M0QZ58 72 aa2.88□□□□□ -1.95
SDCBP-208ENST00000520228 CYSTM1Q9H1C7 97 aa2.88□□□□□ -1.95
SDCBP-208ENST00000520228 PLAC4Q8WY50 150 aa2.86□□□□□ -1.95
SDCBP-208ENST00000520228 H7BZZ5 65 aa2.85□□□□□ -1.95
SDCBP-208ENST00000520228 ATP5EP56381 51 aaPredicted RBP2.85□□□□□ -1.95
SDCBP-208ENST00000520228 KRTAP20-1Q3LI63 56 aa2.85□□□□□ -1.95
SDCBP-208ENST00000520228 LINC01554Q52M75 96 aa2.84□□□□□ -1.95
SDCBP-208ENST00000520228 COA5Q86WW8 74 aa2.82□□□□□ -1.96
SDCBP-208ENST00000520228 PRO2289Q9P1D8 64 aa2.82□□□□□ -1.96
SDCBP-208ENST00000520228 SERP1Q9Y6X1 66 aa2.82□□□□□ -1.96
SDCBP-208ENST00000520228 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
SDCBP-208ENST00000520228 KRTAP12-3P60328 96 aa2.8□□□□□ -1.96
SDCBP-208ENST00000520228 MT1XP80297 61 aa2.79□□□□□ -1.96
SDCBP-208ENST00000520228 MUC12Q9UKN1 5478 aa2.79□□□□□ -1.96
SDCBP-208ENST00000520228 KRTAP12-4P60329 112 aa2.76□□□□□ -1.97
SDCBP-208ENST00000520228 PRO0628Q9UI54 55 aa2.76□□□□□ -1.97
SDCBP-208ENST00000520228 KRTAP13-4Q3LI77 160 aa2.74□□□□□ -1.97
SDCBP-208ENST00000520228 A0A1B0GU33 70 aa2.71□□□□□ -1.98
SDCBP-208ENST00000520228 KRTAP25-1Q3LHN0 102 aa2.71□□□□□ -1.98
SDCBP-208ENST00000520228 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
SDCBP-208ENST00000520228 KMT2DO14686 5537 aa2.7□□□□□ -1.98
SDCBP-208ENST00000520228 A0A0D9SG42 100 aa2.69□□□□□ -1.98
SDCBP-208ENST00000520228 A0A1B0GU69 56 aa2.69□□□□□ -1.98
SDCBP-208ENST00000520228 Q1T7F1 81 aa2.69□□□□□ -1.98
SDCBP-208ENST00000520228 SPATA8Q6RVD6 105 aa2.69□□□□□ -1.98
SDCBP-208ENST00000520228 KRTAP8-1Q8IUC2 63 aa2.68□□□□□ -1.98
SDCBP-208ENST00000520228 V9GYY9 64 aa2.67□□□□□ -1.98
SDCBP-208ENST00000520228 SPRR2FQ96RM1 72 aa2.66□□□□□ -1.98
SDCBP-208ENST00000520228 MDN1Q9NU22 5596 aa2.66□□□□□ -1.98
SDCBP-208ENST00000520228 GPR98Q8WXG9 6306 aa2.65□□□□□ -1.98
SDCBP-208ENST00000520228 KRTAP2-3P0C7H8 128 aa2.65□□□□□ -1.99
SDCBP-208ENST00000520228 KRTAP2-4Q9BYR9 128 aa2.65□□□□□ -1.99
SDCBP-208ENST00000520228 PRR15LQ9BU68 103 aa2.64□□□□□ -1.99
SDCBP-208ENST00000520228 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
SDCBP-208ENST00000520228 LINC01558Q9Y6Z2 57 aa2.61□□□□□ -1.99
SDCBP-208ENST00000520228 SPRR2EP22531 72 aa2.6□□□□□ -1.99
SDCBP-208ENST00000520228 SPRR2BP35325 72 aa2.6□□□□□ -1.99
SDCBP-208ENST00000520228 SPRR2AP35326 72 aa2.6□□□□□ -1.99
SDCBP-208ENST00000520228 K7ERS5 55 aa2.59□□□□□ -1.99
SDCBP-208ENST00000520228 BRK1Q8WUW1 75 aa2.59□□□□□ -1.99
SDCBP-208ENST00000520228 UQCR11O14957 56 aa2.54□□□□□ -2
SDCBP-208ENST00000520228 KRTAP2-1Q9BYU5 128 aa2.54□□□□□ -2
SDCBP-208ENST00000520228 A6NED7 52 aa2.52□□□□□ -2.01
SDCBP-208ENST00000520228 SPRR2DP22532 72 aa2.52□□□□□ -2.01
SDCBP-208ENST00000520228 CDC42SE1Q9NRR8 79 aa2.51□□□□□ -2.01
SDCBP-208ENST00000520228 C10orf95Q9H7T3 257 aa2.5□□□□□ -2.01
SDCBP-208ENST00000520228 TNP1P09430 55 aa2.49□□□□□ -2.01
SDCBP-208ENST00000520228 MIR22HGQ0VDD5 57 aa2.49□□□□□ -2.01
SDCBP-208ENST00000520228 KRTAP19-7Q3SYF9 63 aa2.49□□□□□ -2.01
SDCBP-208ENST00000520228 MT1EP04732 61 aa2.47□□□□□ -2.01
SDCBP-208ENST00000520228 PMAIP1Q13794 54 aa2.46□□□□□ -2.02
SDCBP-208ENST00000520228 KRTAP19-5Q3LI72 72 aa2.46□□□□□ -2.02
SDCBP-208ENST00000520228 KRTAP19-3Q7Z4W3 81 aa2.44□□□□□ -2.02
SDCBP-208ENST00000520228 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
SDCBP-208ENST00000520228 KTN1-AS1Q86SY8 53 aa2.41□□□□□ -2.02
SDCBP-208ENST00000520228 MT1GP13640 62 aa2.39□□□□□ -2.03
SDCBP-208ENST00000520228 MT1LQ93083 61 aa2.38□□□□□ -2.03
SDCBP-208ENST00000520228 DSTQ03001 7570 aaKnown RBP2.36□□□□□ -2.03
SDCBP-208ENST00000520228 MT1MQ8N339 61 aa2.34□□□□□ -2.03
SDCBP-208ENST00000520228 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
SDCBP-208ENST00000520228 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.04
SDCBP-208ENST00000520228 ROMO1P60602 79 aa2.28□□□□□ -2.04
SDCBP-208ENST00000520228 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
SDCBP-208ENST00000520228 MT4P47944 62 aa2.19□□□□□ -2.06
SDCBP-208ENST00000520228 KRTAP20-2Q3LI61 65 aa2.06□□□□□ -2.08
SDCBP-208ENST00000520228 MT1AP04731 61 aa2.02□□□□□ -2.09
SDCBP-208ENST00000520228 SYNE1Q8NF91 8797 aaKnown RBP2.02□□□□□ -2.09
SDCBP-208ENST00000520228 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
SDCBP-208ENST00000520228 KRTAP6-1Q3LI64 71 aa2□□□□□ -2.09
SDCBP-208ENST00000520228 MUC5ACP98088 5654 aa1.93□□□□□ -2.1
SDCBP-208ENST00000520228 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
SDCBP-208ENST00000520228 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
SDCBP-208ENST00000520228 INE1O15225 51 aa1.6□□□□□ -2.15
SDCBP-208ENST00000520228 PHGR1C9JFL3 82 aa1.33□□□□□ -2.2
SDCBP-208ENST00000520228 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
SDCBP-208ENST00000520228 PRM1P04553 51 aa1.17□□□□□ -2.22
SDCBP-208ENST00000520228 KRTAP21-1Q3LI58 79 aa0.96□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 53.2 ms