RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 LINC00472Q9H8W2 130 aa2.17□□□□□ -2.06
CPNE3-202ENST00000517391 KRTAP12-1P59990 96 aa2.16□□□□□ -2.06
CPNE3-202ENST00000517391 FLGP20930 4061 aaPredicted RBP2.15□□□□□ -2.07
CPNE3-202ENST00000517391 HMCN1Q96RW7 5635 aa2.15□□□□□ -2.07
CPNE3-202ENST00000517391 KRTAP12-4P60329 112 aa2.14□□□□□ -2.07
CPNE3-202ENST00000517391 SPATA8Q6RVD6 105 aa2.13□□□□□ -2.07
CPNE3-202ENST00000517391 FSIP2Q5CZC0 6907 aa2.12□□□□□ -2.07
CPNE3-202ENST00000517391 ROMO1P60602 79 aa2.12□□□□□ -2.07
CPNE3-202ENST00000517391 WFDC13Q8IUB5 93 aa2.12□□□□□ -2.07
CPNE3-202ENST00000517391 MMP24-AS1A0A0U1RRL7 71 aa2.11□□□□□ -2.07
CPNE3-202ENST00000517391 UQCR11O14957 56 aa2.11□□□□□ -2.07
CPNE3-202ENST00000517391 SPINK7P58062 85 aa2.11□□□□□ -2.07
CPNE3-202ENST00000517391 ACYP2P14621 99 aa2.1□□□□□ -2.07
CPNE3-202ENST00000517391 MIR22HGQ0VDD5 57 aa2.08□□□□□ -2.08
CPNE3-202ENST00000517391 DMAC1Q96GE9 116 aa2.08□□□□□ -2.08
CPNE3-202ENST00000517391 MT2AP02795 61 aa2.07□□□□□ -2.08
CPNE3-202ENST00000517391 MRPL34Q9BQ48 92 aaKnown RBP2.07□□□□□ -2.08
CPNE3-202ENST00000517391 A0A1B0GU69 56 aa2.05□□□□□ -2.08
CPNE3-202ENST00000517391 MT1FP04733 61 aa2.05□□□□□ -2.08
CPNE3-202ENST00000517391 CSAG1Q6PB30 78 aa2.05□□□□□ -2.08
CPNE3-202ENST00000517391 H1FX-AS1Q4G0G2 97 aa2.04□□□□□ -2.08
CPNE3-202ENST00000517391 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
CPNE3-202ENST00000517391 USH2AO75445 5202 aa1.98□□□□□ -2.09
CPNE3-202ENST00000517391 SSPOA2VEC9 5147 aa1.97□□□□□ -2.09
CPNE3-202ENST00000517391 FCGBPQ9Y6R7 5405 aaPredicted RBP1.96□□□□□ -2.1
CPNE3-202ENST00000517391 S4R3F8 94 aa1.95□□□□□ -2.1
CPNE3-202ENST00000517391 H0YAA0 97 aa1.92□□□□□ -2.1
CPNE3-202ENST00000517391 SPRR2GQ9BYE4 73 aa1.92□□□□□ -2.1
CPNE3-202ENST00000517391 CRIPTQ9P021 101 aa1.92□□□□□ -2.1
CPNE3-202ENST00000517391 MACF1Q9UPN3 7388 aaKnown RBP1.91□□□□□ -2.1
CPNE3-202ENST00000517391 KRTAP19-8Q3LI54 63 aa1.9□□□□□ -2.11
CPNE3-202ENST00000517391 MT1BP07438 61 aa1.88□□□□□ -2.11
CPNE3-202ENST00000517391 SYNE2Q8WXH0 6885 aaKnown RBP1.85□□□□□ -2.11
CPNE3-202ENST00000517391 PLAC4Q8WY50 150 aa1.81□□□□□ -2.12
CPNE3-202ENST00000517391 M0QZ58 72 aa1.77□□□□□ -2.13
CPNE3-202ENST00000517391 KRTAP20-1Q3LI63 56 aa1.77□□□□□ -2.13
CPNE3-202ENST00000517391 NEBP20929 6669 aa1.76□□□□□ -2.13
CPNE3-202ENST00000517391 MT1XP80297 61 aa1.76□□□□□ -2.13
CPNE3-202ENST00000517391 INE1O15225 51 aa1.75□□□□□ -2.13
CPNE3-202ENST00000517391 KMT2DO14686 5537 aa1.74□□□□□ -2.13
CPNE3-202ENST00000517391 KRTAP8-1Q8IUC2 63 aa1.74□□□□□ -2.13
CPNE3-202ENST00000517391 SPRR2FQ96RM1 72 aa1.74□□□□□ -2.13
CPNE3-202ENST00000517391 MUC12Q9UKN1 5478 aa1.73□□□□□ -2.13
CPNE3-202ENST00000517391 KRTAP2-3P0C7H8 128 aa1.72□□□□□ -2.13
CPNE3-202ENST00000517391 KRTAP2-4Q9BYR9 128 aa1.72□□□□□ -2.13
CPNE3-202ENST00000517391 SPRR2EP22531 72 aa1.71□□□□□ -2.14
CPNE3-202ENST00000517391 SPRR2BP35325 72 aa1.71□□□□□ -2.14
CPNE3-202ENST00000517391 SPRR2AP35326 72 aa1.71□□□□□ -2.14
CPNE3-202ENST00000517391 C10orf95Q9H7T3 257 aa1.71□□□□□ -2.14
CPNE3-202ENST00000517391 A0A0D9SG42 100 aa1.69□□□□□ -2.14
CPNE3-202ENST00000517391 MDN1Q9NU22 5596 aa1.69□□□□□ -2.14
CPNE3-202ENST00000517391 KRTAP2-1Q9BYU5 128 aa1.67□□□□□ -2.14
CPNE3-202ENST00000517391 SPRR2DP22532 72 aa1.66□□□□□ -2.14
CPNE3-202ENST00000517391 MT1EP04732 61 aa1.57□□□□□ -2.16
CPNE3-202ENST00000517391 KRTAP19-7Q3SYF9 63 aa1.57□□□□□ -2.16
CPNE3-202ENST00000517391 KRTAP19-3Q7Z4W3 81 aa1.57□□□□□ -2.16
CPNE3-202ENST00000517391 MT1GP13640 62 aa1.55□□□□□ -2.16
CPNE3-202ENST00000517391 TNP1P09430 55 aa1.54□□□□□ -2.16
CPNE3-202ENST00000517391 DSTQ03001 7570 aaKnown RBP1.53□□□□□ -2.16
CPNE3-202ENST00000517391 KRTAP19-5Q3LI72 72 aa1.52□□□□□ -2.17
CPNE3-202ENST00000517391 MT1MQ8N339 61 aa1.49□□□□□ -2.17
CPNE3-202ENST00000517391 MT1LQ93083 61 aa1.49□□□□□ -2.17
CPNE3-202ENST00000517391 GPR98Q8WXG9 6306 aa1.46□□□□□ -2.18
CPNE3-202ENST00000517391 MT4P47944 62 aa1.44□□□□□ -2.18
CPNE3-202ENST00000517391 KRTAP5-10Q6L8G5 202 aa1.38□□□□□ -2.19
CPNE3-202ENST00000517391 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
CPNE3-202ENST00000517391 AHNAK2Q8IVF2 5795 aa1.36□□□□□ -2.19
CPNE3-202ENST00000517391 MT1AP04731 61 aa1.29□□□□□ -2.2
CPNE3-202ENST00000517391 SYNE1Q8NF91 8797 aaKnown RBP1.27□□□□□ -2.21
CPNE3-202ENST00000517391 KRTAP6-1Q3LI64 71 aa1.25□□□□□ -2.21
CPNE3-202ENST00000517391 KRTAP6-2Q3LI66 62 aa1.21□□□□□ -2.22
CPNE3-202ENST00000517391 MUC5ACP98088 5654 aa1.15□□□□□ -2.23
CPNE3-202ENST00000517391 AHNAKQ09666 5890 aaKnown RBP1.14□□□□□ -2.23
CPNE3-202ENST00000517391 MUC5BQ9HC84 5762 aaPredicted RBP1.11□□□□□ -2.23
CPNE3-202ENST00000517391 PRM1P04553 51 aa0.97□□□□□ -2.25
CPNE3-202ENST00000517391 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
CPNE3-202ENST00000517391 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
CPNE3-202ENST00000517391 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 66.3 ms