RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 C10orf95Q9H7T3 257 aa4.85□□□□□ -1.63
TCOF1-215ENST00000515516 GPR98Q8WXG9 6306 aa4.85□□□□□ -1.63
TCOF1-215ENST00000515516 KRTAP4-12Q9BQ66 201 aa4.82□□□□□ -1.64
TCOF1-215ENST00000515516 LINC01558Q9Y6Z2 57 aa4.8□□□□□ -1.64
TCOF1-215ENST00000515516 LCE4AQ5TA78 99 aa4.79□□□□□ -1.64
TCOF1-215ENST00000515516 LCE1DQ5T752 114 aa4.78□□□□□ -1.64
TCOF1-215ENST00000515516 MT4P47944 62 aa4.75□□□□□ -1.65
TCOF1-215ENST00000515516 KRTAP9-9Q9BYP9 154 aa4.75□□□□□ -1.65
TCOF1-215ENST00000515516 KRTAP9-4Q9BYQ2 154 aa4.75□□□□□ -1.65
TCOF1-215ENST00000515516 UQCR11O14957 56 aa4.73□□□□□ -1.65
TCOF1-215ENST00000515516 KRTAP4-3Q9BYR4 195 aa4.72□□□□□ -1.65
TCOF1-215ENST00000515516 TMEM258P61165 79 aa4.7□□□□□ -1.66
TCOF1-215ENST00000515516 KRTAP12-3P60328 96 aa4.69□□□□□ -1.66
TCOF1-215ENST00000515516 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
TCOF1-215ENST00000515516 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
TCOF1-215ENST00000515516 MIR22HGQ0VDD5 57 aa4.62□□□□□ -1.67
TCOF1-215ENST00000515516 K7ERS5 55 aa4.61□□□□□ -1.67
TCOF1-215ENST00000515516 KRTAP25-1Q3LHN0 102 aa4.59□□□□□ -1.67
TCOF1-215ENST00000515516 KRTAP4-7Q9BYR0 210 aa4.59□□□□□ -1.67
TCOF1-215ENST00000515516 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
TCOF1-215ENST00000515516 AHNAK2Q8IVF2 5795 aa4.52□□□□□ -1.69
TCOF1-215ENST00000515516 V9GYY9 64 aa4.51□□□□□ -1.69
TCOF1-215ENST00000515516 PSPHP1O15172 72 aa4.47□□□□□ -1.69
TCOF1-215ENST00000515516 KRTAP5-10Q6L8G5 202 aa4.45□□□□□ -1.7
TCOF1-215ENST00000515516 Q1T7F1 81 aa4.42□□□□□ -1.7
TCOF1-215ENST00000515516 KRTAP5-5Q701N2 237 aaPredicted RBP4.42□□□□□ -1.7
TCOF1-215ENST00000515516 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
TCOF1-215ENST00000515516 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
TCOF1-215ENST00000515516 KRTAP20-2Q3LI61 65 aa4.4□□□□□ -1.71
TCOF1-215ENST00000515516 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
TCOF1-215ENST00000515516 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
TCOF1-215ENST00000515516 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
TCOF1-215ENST00000515516 A6NED7 52 aa4.34□□□□□ -1.71
TCOF1-215ENST00000515516 KRTAP4-2Q9BYR5 136 aa4.33□□□□□ -1.72
TCOF1-215ENST00000515516 CDC42SE1Q9NRR8 79 aa4.31□□□□□ -1.72
TCOF1-215ENST00000515516 LCE3CQ5T5A8 94 aa4.3□□□□□ -1.72
TCOF1-215ENST00000515516 KRTAP5-7Q6L8G8 165 aa4.3□□□□□ -1.72
TCOF1-215ENST00000515516 PCP4P48539 62 aa4.29□□□□□ -1.72
TCOF1-215ENST00000515516 SYNE1Q8NF91 8797 aaKnown RBP4.27□□□□□ -1.73
TCOF1-215ENST00000515516 KRTAP4-11Q9BYQ6 195 aa4.24□□□□□ -1.73
TCOF1-215ENST00000515516 ROMO1P60602 79 aa4.22□□□□□ -1.73
TCOF1-215ENST00000515516 RPS28P62857 69 aaKnown RBP4.22□□□□□ -1.73
TCOF1-215ENST00000515516 MT1AP04731 61 aa4.13□□□□□ -1.75
TCOF1-215ENST00000515516 KRTAP6-1Q3LI64 71 aa4.1□□□□□ -1.75
TCOF1-215ENST00000515516 KRTAP5-2Q701N4 177 aa4.04□□□□□ -1.76
TCOF1-215ENST00000515516 KRTAP9-6A8MVA2 160 aa4□□□□□ -1.77
TCOF1-215ENST00000515516 A0A0A0MQY5 61 aa3.95□□□□□ -1.78
TCOF1-215ENST00000515516 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
TCOF1-215ENST00000515516 KRTAP5-8O75690 187 aa3.88□□□□□ -1.79
TCOF1-215ENST00000515516 MT3P25713 68 aa3.82□□□□□ -1.8
TCOF1-215ENST00000515516 OBSCNQ5VST9 7968 aa3.81□□□□□ -1.8
TCOF1-215ENST00000515516 AHNAKQ09666 5890 aaKnown RBP3.77□□□□□ -1.81
TCOF1-215ENST00000515516 MUC5ACP98088 5654 aa3.74□□□□□ -1.81
TCOF1-215ENST00000515516 MUC5BQ9HC84 5762 aaPredicted RBP3.73□□□□□ -1.81
TCOF1-215ENST00000515516 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
TCOF1-215ENST00000515516 BRK1Q8WUW1 75 aa3.62□□□□□ -1.83
TCOF1-215ENST00000515516 PRO0628Q9UI54 55 aa3.56□□□□□ -1.84
TCOF1-215ENST00000515516 LCE1EQ5T753 118 aa3.5□□□□□ -1.85
TCOF1-215ENST00000515516 PMAIP1Q13794 54 aa3.41□□□□□ -1.86
TCOF1-215ENST00000515516 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
TCOF1-215ENST00000515516 PRAC1Q96KF2 57 aa3.27□□□□□ -1.89
TCOF1-215ENST00000515516 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
TCOF1-215ENST00000515516 KTN1-AS1Q86SY8 53 aa3.2□□□□□ -1.9
TCOF1-215ENST00000515516 LCE3DQ9BYE3 92 aa3.11□□□□□ -1.91
TCOF1-215ENST00000515516 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
TCOF1-215ENST00000515516 NDUFAF8A1L188 74 aa2.93□□□□□ -1.94
TCOF1-215ENST00000515516 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
TCOF1-215ENST00000515516 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.92□□□□□ -1.94
TCOF1-215ENST00000515516 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
TCOF1-215ENST00000515516 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
TCOF1-215ENST00000515516 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
TCOF1-215ENST00000515516 PHGR1C9JFL3 82 aa2.63□□□□□ -1.99
TCOF1-215ENST00000515516 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
TCOF1-215ENST00000515516 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
TCOF1-215ENST00000515516 INE1O15225 51 aa2.23□□□□□ -2.05
TCOF1-215ENST00000515516 PRM1P04553 51 aa2.14□□□□□ -2.07
TCOF1-215ENST00000515516 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
TCOF1-215ENST00000515516 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 6.9 ms