RNA–Protein interactions for RNA: ENST00000515063.1

CAST-242, Transcript of calpastatin, humanhuman

TSL 1 (best)

Gene CAST, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-242ENST00000515063 CRCT1Q9UGL9 99 aa1.76□□□□□ -2.13
CAST-242ENST00000515063 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
CAST-242ENST00000515063 MUC17Q685J3 4493 aa1.74□□□□□ -2.13
CAST-242ENST00000515063 KRTAP12-1P59990 96 aa1.73□□□□□ -2.13
CAST-242ENST00000515063 FAT4Q6V0I7 4981 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 LRP2P98164 4655 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 A0A0D9SG42 100 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 CRIPTQ9P021 101 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 R4GN34 69 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 HMCN2Q8NDA2 5059 aa1.72□□□□□ -2.13
CAST-242ENST00000515063 FSIP2Q5CZC0 6907 aa1.69□□□□□ -2.14
CAST-242ENST00000515063 LPAP08519 4548 aa1.68□□□□□ -2.14
CAST-242ENST00000515063 KRTAP19-2Q3LHN2 52 aa1.68□□□□□ -2.14
CAST-242ENST00000515063 KRTAP4-1Q9BYQ7 146 aa1.67□□□□□ -2.14
CAST-242ENST00000515063 MUC19Q7Z5P9 8384 aa1.67□□□□□ -2.14
CAST-242ENST00000515063 C10orf95Q9H7T3 257 aa1.65□□□□□ -2.15
CAST-242ENST00000515063 FLGP20930 4061 aaPredicted RBP1.65□□□□□ -2.15
CAST-242ENST00000515063 PRO2289Q9P1D8 64 aa1.59□□□□□ -2.15
CAST-242ENST00000515063 TNP1P09430 55 aa1.58□□□□□ -2.16
CAST-242ENST00000515063 SPRR2GQ9BYE4 73 aa1.58□□□□□ -2.16
CAST-242ENST00000515063 PLAC4Q8WY50 150 aa1.57□□□□□ -2.16
CAST-242ENST00000515063 KRTAP12-4P60329 112 aa1.54□□□□□ -2.16
CAST-242ENST00000515063 KRTAP12-3P60328 96 aa1.53□□□□□ -2.16
CAST-242ENST00000515063 MT1HP80294 61 aa1.53□□□□□ -2.16
CAST-242ENST00000515063 KRTAP19-8Q3LI54 63 aa1.53□□□□□ -2.16
CAST-242ENST00000515063 KRTAP20-1Q3LI63 56 aa1.53□□□□□ -2.16
CAST-242ENST00000515063 M0R2T5 61 aa1.51□□□□□ -2.17
CAST-242ENST00000515063 MT2AP02795 61 aa1.51□□□□□ -2.17
CAST-242ENST00000515063 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
CAST-242ENST00000515063 SYNE2Q8WXH0 6885 aaKnown RBP1.5□□□□□ -2.17
CAST-242ENST00000515063 SSPOA2VEC9 5147 aa1.49□□□□□ -2.17
CAST-242ENST00000515063 MT1FP04733 61 aa1.49□□□□□ -2.17
CAST-242ENST00000515063 NEBP20929 6669 aa1.49□□□□□ -2.17
CAST-242ENST00000515063 KRTAP8-1Q8IUC2 63 aa1.47□□□□□ -2.17
CAST-242ENST00000515063 MT1BP07438 61 aa1.46□□□□□ -2.18
CAST-242ENST00000515063 GPR98Q8WXG9 6306 aa1.46□□□□□ -2.18
CAST-242ENST00000515063 MACF1Q9UPN3 7388 aaKnown RBP1.45□□□□□ -2.18
CAST-242ENST00000515063 MT1XP80297 61 aa1.43□□□□□ -2.18
CAST-242ENST00000515063 USH2AO75445 5202 aa1.42□□□□□ -2.18
CAST-242ENST00000515063 KRTAP6-3Q3LI67 103 aa1.41□□□□□ -2.18
CAST-242ENST00000515063 FCGBPQ9Y6R7 5405 aaPredicted RBP1.38□□□□□ -2.19
CAST-242ENST00000515063 INE1O15225 51 aa1.37□□□□□ -2.19
CAST-242ENST00000515063 KRTAP2-3P0C7H8 128 aa1.37□□□□□ -2.19
CAST-242ENST00000515063 KRTAP2-4Q9BYR9 128 aa1.37□□□□□ -2.19
CAST-242ENST00000515063 KMT2DO14686 5537 aa1.33□□□□□ -2.2
CAST-242ENST00000515063 MUC12Q9UKN1 5478 aa1.33□□□□□ -2.2
CAST-242ENST00000515063 KRTAP19-5Q3LI72 72 aa1.32□□□□□ -2.2
CAST-242ENST00000515063 KRTAP2-1Q9BYU5 128 aa1.3□□□□□ -2.2
CAST-242ENST00000515063 KRTAP19-6Q3LI70 58 aa1.29□□□□□ -2.2
CAST-242ENST00000515063 KRTAP19-7Q3SYF9 63 aa1.29□□□□□ -2.2
CAST-242ENST00000515063 MT1EP04732 61 aa1.26□□□□□ -2.21
CAST-242ENST00000515063 MT1LQ93083 61 aa1.25□□□□□ -2.21
CAST-242ENST00000515063 MDN1Q9NU22 5596 aa1.23□□□□□ -2.21
CAST-242ENST00000515063 MT1GP13640 62 aa1.22□□□□□ -2.21
CAST-242ENST00000515063 AHNAK2Q8IVF2 5795 aa1.22□□□□□ -2.21
CAST-242ENST00000515063 SPRR2EP22531 72 aa1.21□□□□□ -2.22
CAST-242ENST00000515063 SPRR2BP35325 72 aa1.21□□□□□ -2.22
CAST-242ENST00000515063 SPRR2AP35326 72 aa1.21□□□□□ -2.22
CAST-242ENST00000515063 KRTAP19-3Q7Z4W3 81 aa1.2□□□□□ -2.22
CAST-242ENST00000515063 SPRR2DP22532 72 aa1.18□□□□□ -2.22
CAST-242ENST00000515063 MT1MQ8N339 61 aa1.18□□□□□ -2.22
CAST-242ENST00000515063 DSTQ03001 7570 aaKnown RBP1.17□□□□□ -2.22
CAST-242ENST00000515063 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
CAST-242ENST00000515063 SPRR2FQ96RM1 72 aa1.13□□□□□ -2.23
CAST-242ENST00000515063 HMCN1Q96RW7 5635 aa1.13□□□□□ -2.23
CAST-242ENST00000515063 AHNAKQ09666 5890 aaKnown RBP1.12□□□□□ -2.23
CAST-242ENST00000515063 MT1AP04731 61 aa1.1□□□□□ -2.23
CAST-242ENST00000515063 MT4P47944 62 aa1.06□□□□□ -2.24
CAST-242ENST00000515063 SYNE1Q8NF91 8797 aaKnown RBP1.06□□□□□ -2.24
CAST-242ENST00000515063 KRTAP6-1Q3LI64 71 aa1.04□□□□□ -2.24
CAST-242ENST00000515063 MUC5BQ9HC84 5762 aaPredicted RBP1.04□□□□□ -2.24
CAST-242ENST00000515063 MUC5ACP98088 5654 aa1□□□□□ -2.25
CAST-242ENST00000515063 PRM1P04553 51 aa0.92□□□□□ -2.26
CAST-242ENST00000515063 KRTAP6-2Q3LI66 62 aa0.92□□□□□ -2.26
CAST-242ENST00000515063 KRTAP20-2Q3LI61 65 aa0.87□□□□□ -2.27
CAST-242ENST00000515063 PHGR1C9JFL3 82 aa0.75□□□□□ -2.29
CAST-242ENST00000515063 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
CAST-242ENST00000515063 KRTAP21-1Q3LI58 79 aa0.62□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms