RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 H0YAA0 97 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 K7ERU9 68 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 M0QZ58 72 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 MT1BP07438 61 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 KRTAP19-8Q3LI54 63 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 LINC01554Q52M75 96 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 SMIM20Q8N5G0 67 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 PRO2289Q9P1D8 64 aa1.48□□□□□ -2.17
NUP54-212ENST00000513248 MT-ATP8P03928 68 aa1.47□□□□□ -2.17
NUP54-212ENST00000513248 ACYP2P14621 99 aa1.47□□□□□ -2.17
NUP54-212ENST00000513248 DMAC1Q96GE9 116 aa1.47□□□□□ -2.17
NUP54-212ENST00000513248 HMCN1Q96RW7 5635 aa1.46□□□□□ -2.18
NUP54-212ENST00000513248 TRAV7A0A075B6U4 112 aa1.46□□□□□ -2.18
NUP54-212ENST00000513248 SNURFQ9Y675 71 aa1.44□□□□□ -2.18
NUP54-212ENST00000513248 KRTAP8-1Q8IUC2 63 aa1.41□□□□□ -2.18
NUP54-212ENST00000513248 SERP2Q8N6R1 65 aa1.41□□□□□ -2.18
NUP54-212ENST00000513248 ANAPC13Q9BS18 74 aa1.41□□□□□ -2.18
NUP54-212ENST00000513248 PRO0628Q9UI54 55 aa1.41□□□□□ -2.18
NUP54-212ENST00000513248 DSTQ03001 7570 aaKnown RBP1.41□□□□□ -2.18
NUP54-212ENST00000513248 KRTAP25-1Q3LHN0 102 aa1.4□□□□□ -2.19
NUP54-212ENST00000513248 SPRR2FQ96RM1 72 aa1.4□□□□□ -2.19
NUP54-212ENST00000513248 SERP1Q9Y6X1 66 aa1.4□□□□□ -2.19
NUP54-212ENST00000513248 SPRR2EP22531 72 aa1.39□□□□□ -2.19
NUP54-212ENST00000513248 SPRR2BP35325 72 aa1.39□□□□□ -2.19
NUP54-212ENST00000513248 SPRR2AP35326 72 aa1.39□□□□□ -2.19
NUP54-212ENST00000513248 MT1XP80297 61 aa1.39□□□□□ -2.19
NUP54-212ENST00000513248 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
NUP54-212ENST00000513248 COA5Q86WW8 74 aa1.38□□□□□ -2.19
NUP54-212ENST00000513248 A0A0D9SG42 100 aa1.37□□□□□ -2.19
NUP54-212ENST00000513248 COX7CP15954 63 aa1.37□□□□□ -2.19
NUP54-212ENST00000513248 A0A1B0GU33 70 aa1.35□□□□□ -2.19
NUP54-212ENST00000513248 KRTAP5-10Q6L8G5 202 aa1.35□□□□□ -2.19
NUP54-212ENST00000513248 A0A1B0GU69 56 aa1.34□□□□□ -2.19
NUP54-212ENST00000513248 SPRR2DP22532 72 aa1.34□□□□□ -2.19
NUP54-212ENST00000513248 SPATA8Q6RVD6 105 aa1.34□□□□□ -2.19
NUP54-212ENST00000513248 KRTAP13-4Q3LI77 160 aa1.33□□□□□ -2.2
NUP54-212ENST00000513248 PRR15LQ9BU68 103 aa1.32□□□□□ -2.2
NUP54-212ENST00000513248 A6NED7 52 aa1.31□□□□□ -2.2
NUP54-212ENST00000513248 H7BZZ5 65 aa1.31□□□□□ -2.2
NUP54-212ENST00000513248 PMAIP1Q13794 54 aa1.3□□□□□ -2.2
NUP54-212ENST00000513248 K7ERS5 55 aa1.29□□□□□ -2.2
NUP54-212ENST00000513248 ATP5EP56381 51 aaPredicted RBP1.29□□□□□ -2.2
NUP54-212ENST00000513248 CYSTM1Q9H1C7 97 aa1.29□□□□□ -2.2
NUP54-212ENST00000513248 CCDC179H3BU77 68 aa1.28□□□□□ -2.2
NUP54-212ENST00000513248 KRTAP12-1P59990 96 aa1.28□□□□□ -2.2
NUP54-212ENST00000513248 AHNAKQ09666 5890 aaKnown RBP1.28□□□□□ -2.2
NUP54-212ENST00000513248 TNP1P09430 55 aa1.27□□□□□ -2.21
NUP54-212ENST00000513248 UQCR11O14957 56 aa1.25□□□□□ -2.21
NUP54-212ENST00000513248 TMEM258P61165 79 aa1.25□□□□□ -2.21
NUP54-212ENST00000513248 MT1EP04732 61 aa1.24□□□□□ -2.21
NUP54-212ENST00000513248 KRTAP19-5Q3LI72 72 aa1.24□□□□□ -2.21
NUP54-212ENST00000513248 KRTAP19-3Q7Z4W3 81 aa1.24□□□□□ -2.21
NUP54-212ENST00000513248 LINC01558Q9Y6Z2 57 aa1.24□□□□□ -2.21
NUP54-212ENST00000513248 MIR22HGQ0VDD5 57 aa1.23□□□□□ -2.21
NUP54-212ENST00000513248 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
NUP54-212ENST00000513248 MT1GP13640 62 aa1.22□□□□□ -2.21
NUP54-212ENST00000513248 C10orf95Q9H7T3 257 aa1.22□□□□□ -2.21
NUP54-212ENST00000513248 MUC5BQ9HC84 5762 aaPredicted RBP1.2□□□□□ -2.22
NUP54-212ENST00000513248 MT1MQ8N339 61 aa1.19□□□□□ -2.22
NUP54-212ENST00000513248 MT1LQ93083 61 aa1.19□□□□□ -2.22
NUP54-212ENST00000513248 MT4P47944 62 aa1.18□□□□□ -2.22
NUP54-212ENST00000513248 MUC5ACP98088 5654 aa1.17□□□□□ -2.22
NUP54-212ENST00000513248 KTN1-AS1Q86SY8 53 aa1.16□□□□□ -2.22
NUP54-212ENST00000513248 Q1T7F1 81 aa1.15□□□□□ -2.23
NUP54-212ENST00000513248 CDC42SE1Q9NRR8 79 aa1.15□□□□□ -2.23
NUP54-212ENST00000513248 RPS28P62857 69 aaKnown RBP1.13□□□□□ -2.23
NUP54-212ENST00000513248 ROMO1P60602 79 aa1.11□□□□□ -2.23
NUP54-212ENST00000513248 BRK1Q8WUW1 75 aa1.1□□□□□ -2.23
NUP54-212ENST00000513248 KRTAP20-2Q3LI61 65 aa1.06□□□□□ -2.24
NUP54-212ENST00000513248 MT1AP04731 61 aa1.02□□□□□ -2.25
NUP54-212ENST00000513248 SYNE1Q8NF91 8797 aaKnown RBP1.02□□□□□ -2.25
NUP54-212ENST00000513248 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
NUP54-212ENST00000513248 KRTAP6-2Q3LI66 62 aa0.97□□□□□ -2.25
NUP54-212ENST00000513248 INE1O15225 51 aa0.85□□□□□ -2.27
NUP54-212ENST00000513248 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
NUP54-212ENST00000513248 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
NUP54-212ENST00000513248 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
NUP54-212ENST00000513248 PRM1P04553 51 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 181.4 ms