RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 STARD9Q9P2P6 4700 aa1.37□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP2-3P0C7H8 128 aa1.37□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP2-4Q9BYR9 128 aa1.37□□□□□ -2.19
VCAN-209ENST00000513016 SPRR5A0A1B0GTR4 108 aa1.36□□□□□ -2.19
VCAN-209ENST00000513016 CMYA5Q8N3K9 4069 aa1.36□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP19-2Q3LHN2 52 aa1.36□□□□□ -2.19
VCAN-209ENST00000513016 MT1MQ8N339 61 aa1.36□□□□□ -2.19
VCAN-209ENST00000513016 LOC100996750A0A140TA64 210 aa1.35□□□□□ -2.19
VCAN-209ENST00000513016 LCE1AQ5T7P2 110 aa1.35□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP4-6Q9BYQ5 205 aa1.35□□□□□ -2.19
VCAN-209ENST00000513016 KMT2AQ03164 3969 aa1.34□□□□□ -2.19
VCAN-209ENST00000513016 FRAS1Q86XX4 4008 aa1.34□□□□□ -2.19
VCAN-209ENST00000513016 HECTD4Q9Y4D8 3996 aa1.32□□□□□ -2.2
VCAN-209ENST00000513016 LYSTQ99698 3801 aa1.31□□□□□ -2.2
VCAN-209ENST00000513016 LCE4AQ5TA78 99 aa1.31□□□□□ -2.2
VCAN-209ENST00000513016 KRTAP2-1Q9BYU5 128 aa1.31□□□□□ -2.2
VCAN-209ENST00000513016 FCGBPQ9Y6R7 5405 aaPredicted RBP1.31□□□□□ -2.2
VCAN-209ENST00000513016 DNAH7Q8WXX0 4024 aa1.31□□□□□ -2.2
VCAN-209ENST00000513016 MDN1Q9NU22 5596 aa1.3□□□□□ -2.2
VCAN-209ENST00000513016 LCE1BQ5T7P3 118 aa1.3□□□□□ -2.2
VCAN-209ENST00000513016 MUC17Q685J3 4493 aa1.29□□□□□ -2.2
VCAN-209ENST00000513016 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.29□□□□□ -2.2
VCAN-209ENST00000513016 MT1AP04731 61 aa1.29□□□□□ -2.2
VCAN-209ENST00000513016 LCE1DQ5T752 114 aa1.29□□□□□ -2.2
VCAN-209ENST00000513016 VPS13BQ7Z7G8 4022 aa1.29□□□□□ -2.2
VCAN-209ENST00000513016 KRTAP4-7Q9BYR0 210 aa1.27□□□□□ -2.21
VCAN-209ENST00000513016 LCE5AQ5TCM9 118 aa1.26□□□□□ -2.21
VCAN-209ENST00000513016 PKHD1P08F94 4074 aa1.26□□□□□ -2.21
VCAN-209ENST00000513016 MUC5BQ9HC84 5762 aaPredicted RBP1.25□□□□□ -2.21
VCAN-209ENST00000513016 KRTAP5-2Q701N4 177 aa1.23□□□□□ -2.21
VCAN-209ENST00000513016 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
VCAN-209ENST00000513016 TNXBP22105 4242 aa1.22□□□□□ -2.21
VCAN-209ENST00000513016 PRM1P04553 51 aa1.22□□□□□ -2.21
VCAN-209ENST00000513016 KRTAP4-3Q9BYR4 195 aa1.21□□□□□ -2.22
VCAN-209ENST00000513016 KRTAP9-4Q9BYQ2 154 aa1.19□□□□□ -2.22
VCAN-209ENST00000513016 SYNE2Q8WXH0 6885 aaKnown RBP1.18□□□□□ -2.22
VCAN-209ENST00000513016 KRTAP4-9Q9BYQ8 210 aa1.17□□□□□ -2.22
VCAN-209ENST00000513016 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.17□□□□□ -2.22
VCAN-209ENST00000513016 SYNE1Q8NF91 8797 aaKnown RBP1.16□□□□□ -2.22
VCAN-209ENST00000513016 LPAP08519 4548 aa1.16□□□□□ -2.22
VCAN-209ENST00000513016 LCE1CQ5T751 118 aa1.16□□□□□ -2.22
VCAN-209ENST00000513016 LCE1EQ5T753 118 aa1.16□□□□□ -2.22
VCAN-209ENST00000513016 LCE1FQ5T754 118 aa1.16□□□□□ -2.22
VCAN-209ENST00000513016 KRTAP9-9Q9BYP9 154 aa1.15□□□□□ -2.23
VCAN-209ENST00000513016 KRTAP6-2Q3LI66 62 aa1.15□□□□□ -2.23
VCAN-209ENST00000513016 FLGP20930 4061 aaPredicted RBP1.15□□□□□ -2.23
VCAN-209ENST00000513016 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
VCAN-209ENST00000513016 KRTAP6-1Q3LI64 71 aa1.13□□□□□ -2.23
VCAN-209ENST00000513016 OBSCNQ5VST9 7968 aa1.12□□□□□ -2.23
VCAN-209ENST00000513016 FSIP2Q5CZC0 6907 aa1.11□□□□□ -2.23
VCAN-209ENST00000513016 GPR98Q8WXG9 6306 aa1.1□□□□□ -2.23
VCAN-209ENST00000513016 KRTAP5-9P26371 169 aa1.08□□□□□ -2.24
VCAN-209ENST00000513016 HMCN1Q96RW7 5635 aa1.07□□□□□ -2.24
VCAN-209ENST00000513016 NEBP20929 6669 aa1.07□□□□□ -2.24
VCAN-209ENST00000513016 KRTAP4-2Q9BYR5 136 aa1.06□□□□□ -2.24
VCAN-209ENST00000513016 KRTAP5-3Q6L8H2 238 aa1.05□□□□□ -2.24
VCAN-209ENST00000513016 MUC5ACP98088 5654 aa1.02□□□□□ -2.25
VCAN-209ENST00000513016 KRTAP20-2Q3LI61 65 aa1.01□□□□□ -2.25
VCAN-209ENST00000513016 MACF1Q9UPN3 7388 aaKnown RBP1□□□□□ -2.25
VCAN-209ENST00000513016 KRTAP9-6A8MVA2 160 aa1□□□□□ -2.25
VCAN-209ENST00000513016 KRTAP5-4Q6L8H1 288 aa0.99□□□□□ -2.25
VCAN-209ENST00000513016 KRTAP4-12Q9BQ66 201 aa0.97□□□□□ -2.25
VCAN-209ENST00000513016 AHNAKQ09666 5890 aaKnown RBP0.95□□□□□ -2.26
VCAN-209ENST00000513016 DSTQ03001 7570 aaKnown RBP0.94□□□□□ -2.26
VCAN-209ENST00000513016 KRTAP4-11Q9BYQ6 195 aa0.93□□□□□ -2.26
VCAN-209ENST00000513016 MUC12Q9UKN1 5478 aa0.92□□□□□ -2.26
VCAN-209ENST00000513016 MUC19Q7Z5P9 8384 aa0.85□□□□□ -2.27
VCAN-209ENST00000513016 KRTAP4-4Q9BYR3 166 aa0.82□□□□□ -2.28
VCAN-209ENST00000513016 KRTAP5-5Q701N2 237 aaPredicted RBP0.81□□□□□ -2.28
VCAN-209ENST00000513016 KRTAP5-8O75690 187 aa0.76□□□□□ -2.29
VCAN-209ENST00000513016 PHGR1C9JFL3 82 aa0.74□□□□□ -2.29
VCAN-209ENST00000513016 KRTAP5-11Q6L8G4 156 aa0.68□□□□□ -2.3
VCAN-209ENST00000513016 KRTAP5-1Q6L8H4 278 aa0.65□□□□□ -2.31
VCAN-209ENST00000513016 KRTAP5-7Q6L8G8 165 aa0.65□□□□□ -2.31
VCAN-209ENST00000513016 KRTAP21-1Q3LI58 79 aa0.64□□□□□ -2.31
VCAN-209ENST00000513016 KRTAP5-10Q6L8G5 202 aa0.63□□□□□ -2.31
VCAN-209ENST00000513016 KRTAP21-2Q3LI59 83 aa0.56□□□□□ -2.32
VCAN-209ENST00000513016 MUC16Q8WXI7 14507 aa0.43□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 43.6 ms