RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 KRTAP4-3Q9BYR4 195 aa6.26□□□□□ -1.41
TPM3-220ENST00000509601 HMCN1Q96RW7 5635 aa6.24□□□□□ -1.41
TPM3-220ENST00000509601 LCE4AQ5TA78 99 aa6.23□□□□□ -1.41
TPM3-220ENST00000509601 MT4P47944 62 aa6.17□□□□□ -1.42
TPM3-220ENST00000509601 KRTAP5-4Q6L8H1 288 aa6.14□□□□□ -1.43
TPM3-220ENST00000509601 SVIPQ8NHG7 77 aa6.12□□□□□ -1.43
TPM3-220ENST00000509601 KRTAP4-7Q9BYR0 210 aa6.11□□□□□ -1.43
TPM3-220ENST00000509601 UQCR11O14957 56 aa6.1□□□□□ -1.43
TPM3-220ENST00000509601 KRTAP12-3P60328 96 aa6.1□□□□□ -1.43
TPM3-220ENST00000509601 TMEM258P61165 79 aa6.08□□□□□ -1.44
TPM3-220ENST00000509601 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
TPM3-220ENST00000509601 KRTAP4-6Q9BYQ5 205 aa6.04□□□□□ -1.44
TPM3-220ENST00000509601 LOC100996750A0A140TA64 210 aa6.03□□□□□ -1.44
TPM3-220ENST00000509601 MIR22HGQ0VDD5 57 aa5.96□□□□□ -1.46
TPM3-220ENST00000509601 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
TPM3-220ENST00000509601 KRTAP5-5Q701N2 237 aaPredicted RBP5.87□□□□□ -1.47
TPM3-220ENST00000509601 KRTAP5-10Q6L8G5 202 aa5.86□□□□□ -1.47
TPM3-220ENST00000509601 PSPHP1O15172 72 aa5.81□□□□□ -1.48
TPM3-220ENST00000509601 H3BS24 57 aa5.8□□□□□ -1.48
TPM3-220ENST00000509601 K7ERS5 55 aa5.8□□□□□ -1.48
TPM3-220ENST00000509601 Q1T7F1 81 aa5.78□□□□□ -1.48
TPM3-220ENST00000509601 KRTAP20-2Q3LI61 65 aa5.78□□□□□ -1.48
TPM3-220ENST00000509601 SYNE1Q8NF91 8797 aaKnown RBP5.78□□□□□ -1.48
TPM3-220ENST00000509601 V9GYY9 64 aa5.77□□□□□ -1.49
TPM3-220ENST00000509601 KRTAP19-4Q3LI73 84 aa5.76□□□□□ -1.49
TPM3-220ENST00000509601 SPRR5A0A1B0GTR4 108 aa5.74□□□□□ -1.49
TPM3-220ENST00000509601 KRTAP23-1A1A580 65 aa5.74□□□□□ -1.49
TPM3-220ENST00000509601 KRTAP5-3Q6L8H2 238 aa5.71□□□□□ -1.5
TPM3-220ENST00000509601 KRTAP12-4P60329 112 aa5.68□□□□□ -1.5
TPM3-220ENST00000509601 KRTAP15-1Q3LI76 137 aa5.68□□□□□ -1.5
TPM3-220ENST00000509601 LCE3CQ5T5A8 94 aa5.63□□□□□ -1.51
TPM3-220ENST00000509601 KRTAP5-7Q6L8G8 165 aa5.63□□□□□ -1.51
TPM3-220ENST00000509601 A6NED7 52 aa5.56□□□□□ -1.52
TPM3-220ENST00000509601 CDC42SE1Q9NRR8 79 aa5.51□□□□□ -1.53
TPM3-220ENST00000509601 ROMO1P60602 79 aa5.45□□□□□ -1.54
TPM3-220ENST00000509601 MT1AP04731 61 aa5.42□□□□□ -1.54
TPM3-220ENST00000509601 KRTAP6-1Q3LI64 71 aa5.42□□□□□ -1.54
TPM3-220ENST00000509601 RPS28P62857 69 aaKnown RBP5.39□□□□□ -1.55
TPM3-220ENST00000509601 KRTAP9-6A8MVA2 160 aa5.36□□□□□ -1.55
TPM3-220ENST00000509601 KRTAP5-2Q701N4 177 aa5.36□□□□□ -1.55
TPM3-220ENST00000509601 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
TPM3-220ENST00000509601 KRTAP9-4Q9BYQ2 154 aa5.27□□□□□ -1.57
TPM3-220ENST00000509601 KRTAP4-12Q9BQ66 201 aa5.25□□□□□ -1.57
TPM3-220ENST00000509601 PCP4P48539 62 aa5.19□□□□□ -1.58
TPM3-220ENST00000509601 KRTAP6-2Q3LI66 62 aa5.18□□□□□ -1.58
TPM3-220ENST00000509601 KRTAP9-9Q9BYP9 154 aa5.14□□□□□ -1.59
TPM3-220ENST00000509601 KRTAP5-8O75690 187 aa5.13□□□□□ -1.59
TPM3-220ENST00000509601 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
TPM3-220ENST00000509601 AHNAKQ09666 5890 aaKnown RBP5.02□□□□□ -1.61
TPM3-220ENST00000509601 MUC5BQ9HC84 5762 aaPredicted RBP5.02□□□□□ -1.61
TPM3-220ENST00000509601 MT3P25713 68 aa4.96□□□□□ -1.62
TPM3-220ENST00000509601 MUC5ACP98088 5654 aa4.93□□□□□ -1.62
TPM3-220ENST00000509601 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
TPM3-220ENST00000509601 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
TPM3-220ENST00000509601 KRTAP4-2Q9BYR5 136 aa4.68□□□□□ -1.66
TPM3-220ENST00000509601 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
TPM3-220ENST00000509601 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
TPM3-220ENST00000509601 PMAIP1Q13794 54 aa4.37□□□□□ -1.71
TPM3-220ENST00000509601 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
TPM3-220ENST00000509601 PRAC1Q96KF2 57 aa4.29□□□□□ -1.72
TPM3-220ENST00000509601 LCE1CQ5T751 118 aa4.25□□□□□ -1.73
TPM3-220ENST00000509601 LCE3DQ9BYE3 92 aa4.03□□□□□ -1.76
TPM3-220ENST00000509601 PRO0628Q9UI54 55 aa3.91□□□□□ -1.78
TPM3-220ENST00000509601 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.87□□□□□ -1.79
TPM3-220ENST00000509601 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
TPM3-220ENST00000509601 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
TPM3-220ENST00000509601 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
TPM3-220ENST00000509601 KTN1-AS1Q86SY8 53 aa3.76□□□□□ -1.81
TPM3-220ENST00000509601 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
TPM3-220ENST00000509601 KRTAP21-2Q3LI59 83 aa3.58□□□□□ -1.84
TPM3-220ENST00000509601 LUZP6Q538Z0 58 aa3.56□□□□□ -1.84
TPM3-220ENST00000509601 PHGR1C9JFL3 82 aa3.38□□□□□ -1.87
TPM3-220ENST00000509601 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
TPM3-220ENST00000509601 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
TPM3-220ENST00000509601 PRM1P04553 51 aa2.79□□□□□ -1.96
TPM3-220ENST00000509601 KRTAP21-1Q3LI58 79 aa2.56□□□□□ -2
TPM3-220ENST00000509601 INE1O15225 51 aa2.22□□□□□ -2.05
TPM3-220ENST00000509601 MUC16Q8WXI7 14507 aa2.22□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 8 ms