RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 FSIP2Q5CZC0 6907 aa6.02□□□□□ -1.45
CCHCR1-228ENST00000509552 LCE2DQ5TA82 110 aaPredicted RBP5.89□□□□□ -1.47
CCHCR1-228ENST00000509552 KRTAP19-3Q7Z4W3 81 aa5.87□□□□□ -1.47
CCHCR1-228ENST00000509552 MT1GP13640 62 aa5.86□□□□□ -1.47
CCHCR1-228ENST00000509552 FCGBPQ9Y6R7 5405 aaPredicted RBP5.86□□□□□ -1.47
CCHCR1-228ENST00000509552 KRTAP4-3Q9BYR4 195 aa5.85□□□□□ -1.47
CCHCR1-228ENST00000509552 MT1MQ8N339 61 aa5.84□□□□□ -1.47
CCHCR1-228ENST00000509552 LOC100996750A0A140TA64 210 aa5.81□□□□□ -1.48
CCHCR1-228ENST00000509552 MUC12Q9UKN1 5478 aa5.79□□□□□ -1.48
CCHCR1-228ENST00000509552 SPRR2FQ96RM1 72 aa5.68□□□□□ -1.5
CCHCR1-228ENST00000509552 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
CCHCR1-228ENST00000509552 LCE5AQ5TCM9 118 aa5.66□□□□□ -1.5
CCHCR1-228ENST00000509552 MACF1Q9UPN3 7388 aaKnown RBP5.51□□□□□ -1.53
CCHCR1-228ENST00000509552 DSTQ03001 7570 aaKnown RBP5.47□□□□□ -1.53
CCHCR1-228ENST00000509552 KRTAP9-2Q9BYQ4 174 aa5.46□□□□□ -1.54
CCHCR1-228ENST00000509552 KRTAP12-4P60329 112 aa5.36□□□□□ -1.55
CCHCR1-228ENST00000509552 LCE3BQ5TA77 95 aa5.35□□□□□ -1.55
CCHCR1-228ENST00000509552 SYNE2Q8WXH0 6885 aaKnown RBP5.32□□□□□ -1.56
CCHCR1-228ENST00000509552 MDN1Q9NU22 5596 aa5.3□□□□□ -1.56
CCHCR1-228ENST00000509552 KRTAP5-9P26371 169 aa5.29□□□□□ -1.56
CCHCR1-228ENST00000509552 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
CCHCR1-228ENST00000509552 KRTAP6-1Q3LI64 71 aa5.27□□□□□ -1.57
CCHCR1-228ENST00000509552 MT1AP04731 61 aa5.26□□□□□ -1.57
CCHCR1-228ENST00000509552 SPRR2EP22531 72 aa5.19□□□□□ -1.58
CCHCR1-228ENST00000509552 SPRR2BP35325 72 aa5.19□□□□□ -1.58
CCHCR1-228ENST00000509552 SPRR2AP35326 72 aa5.19□□□□□ -1.58
CCHCR1-228ENST00000509552 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
CCHCR1-228ENST00000509552 KRTAP5-5Q701N2 237 aaPredicted RBP5.15□□□□□ -1.58
CCHCR1-228ENST00000509552 KRTAP9-6A0A140TA67 174 aa5.15□□□□□ -1.59
CCHCR1-228ENST00000509552 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
CCHCR1-228ENST00000509552 SYNE1Q8NF91 8797 aaKnown RBP5.07□□□□□ -1.6
CCHCR1-228ENST00000509552 LCE3EQ5T5B0 92 aa5□□□□□ -1.61
CCHCR1-228ENST00000509552 SPRR2DP22532 72 aa4.97□□□□□ -1.61
CCHCR1-228ENST00000509552 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
CCHCR1-228ENST00000509552 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
CCHCR1-228ENST00000509552 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.85□□□□□ -1.63
CCHCR1-228ENST00000509552 KRTAP9-7A8MTY7 169 aa4.76□□□□□ -1.65
CCHCR1-228ENST00000509552 MT3P25713 68 aa4.75□□□□□ -1.65
CCHCR1-228ENST00000509552 KRTAP6-2Q3LI66 62 aa4.74□□□□□ -1.65
CCHCR1-228ENST00000509552 PRM1P04553 51 aa4.72□□□□□ -1.65
CCHCR1-228ENST00000509552 KRTAP5-4Q6L8H1 288 aa4.57□□□□□ -1.68
CCHCR1-228ENST00000509552 NEBP20929 6669 aa4.49□□□□□ -1.69
CCHCR1-228ENST00000509552 OBSCNQ5VST9 7968 aa4.44□□□□□ -1.7
CCHCR1-228ENST00000509552 KRTAP4-6Q9BYQ5 205 aa4.37□□□□□ -1.71
CCHCR1-228ENST00000509552 MT4P47944 62 aa4.35□□□□□ -1.71
CCHCR1-228ENST00000509552 LCE4AQ5TA78 99 aa4.34□□□□□ -1.72
CCHCR1-228ENST00000509552 KRTAP20-2Q3LI61 65 aa4.29□□□□□ -1.72
CCHCR1-228ENST00000509552 KRTAP5-2Q701N4 177 aa4.26□□□□□ -1.73
CCHCR1-228ENST00000509552 HMCN1Q96RW7 5635 aa4.15□□□□□ -1.75
CCHCR1-228ENST00000509552 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
CCHCR1-228ENST00000509552 LCE1DQ5T752 114 aa4.1□□□□□ -1.75
CCHCR1-228ENST00000509552 KRTAP20-1Q3LI63 56 aa4.09□□□□□ -1.75
CCHCR1-228ENST00000509552 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
CCHCR1-228ENST00000509552 MUC5ACP98088 5654 aa3.95□□□□□ -1.78
CCHCR1-228ENST00000509552 LCE1EQ5T753 118 aa3.9□□□□□ -1.78
CCHCR1-228ENST00000509552 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
CCHCR1-228ENST00000509552 KRTAP5-10Q6L8G5 202 aa3.69□□□□□ -1.82
CCHCR1-228ENST00000509552 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
CCHCR1-228ENST00000509552 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
CCHCR1-228ENST00000509552 KRTAP4-2Q9BYR5 136 aa3.65□□□□□ -1.83
CCHCR1-228ENST00000509552 GPR98Q8WXG9 6306 aa3.62□□□□□ -1.83
CCHCR1-228ENST00000509552 KRTAP4-11Q9BYQ6 195 aa3.55□□□□□ -1.84
CCHCR1-228ENST00000509552 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.46□□□□□ -1.86
CCHCR1-228ENST00000509552 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
CCHCR1-228ENST00000509552 KRTAP5-8O75690 187 aa3.39□□□□□ -1.87
CCHCR1-228ENST00000509552 KRTAP5-7Q6L8G8 165 aa3.36□□□□□ -1.87
CCHCR1-228ENST00000509552 AHNAK2Q8IVF2 5795 aa3.36□□□□□ -1.87
CCHCR1-228ENST00000509552 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
CCHCR1-228ENST00000509552 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
CCHCR1-228ENST00000509552 MUC5BQ9HC84 5762 aaPredicted RBP2.99□□□□□ -1.93
CCHCR1-228ENST00000509552 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
CCHCR1-228ENST00000509552 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
CCHCR1-228ENST00000509552 KRTAP9-9Q9BYP9 154 aa2.91□□□□□ -1.94
CCHCR1-228ENST00000509552 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
CCHCR1-228ENST00000509552 AHNAKQ09666 5890 aaKnown RBP2.84□□□□□ -1.96
CCHCR1-228ENST00000509552 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
CCHCR1-228ENST00000509552 PHGR1C9JFL3 82 aa2.72□□□□□ -1.97
CCHCR1-228ENST00000509552 MUC16Q8WXI7 14507 aa1.8□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 90.7 ms