RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 LINC01554Q52M75 96 aa1.91□□□□□ -2.1
NUP54-206ENST00000508465 M0QZ58 72 aa1.9□□□□□ -2.11
NUP54-206ENST00000508465 PLAC4Q8WY50 150 aa1.9□□□□□ -2.11
NUP54-206ENST00000508465 MT1XP80297 61 aa1.89□□□□□ -2.11
NUP54-206ENST00000508465 SYNE2Q8WXH0 6885 aaKnown RBP1.89□□□□□ -2.11
NUP54-206ENST00000508465 C20orf197Q8N268 126 aa1.88□□□□□ -2.11
NUP54-206ENST00000508465 CHKB-CPT1BH3BT56 60 aa1.87□□□□□ -2.11
NUP54-206ENST00000508465 MUC12Q9UKN1 5478 aa1.86□□□□□ -2.11
NUP54-206ENST00000508465 KMT2DO14686 5537 aa1.86□□□□□ -2.11
NUP54-206ENST00000508465 SERP2Q8N6R1 65 aa1.86□□□□□ -2.11
NUP54-206ENST00000508465 SPTSSBQ8NFR3 76 aa1.86□□□□□ -2.11
NUP54-206ENST00000508465 MDN1Q9NU22 5596 aa1.85□□□□□ -2.11
NUP54-206ENST00000508465 PRO2289Q9P1D8 64 aa1.85□□□□□ -2.11
NUP54-206ENST00000508465 TMEM258P61165 79 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 KRTAP13-4Q3LI77 160 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 KTN1-AS1Q86SY8 53 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 COA5Q86WW8 74 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 KRTAP8-1Q8IUC2 63 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 SPRR2FQ96RM1 72 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 CYSTM1Q9H1C7 97 aa1.82□□□□□ -2.12
NUP54-206ENST00000508465 SPRR5A0A1B0GTR4 108 aa1.81□□□□□ -2.12
NUP54-206ENST00000508465 COX7CP15954 63 aa1.8□□□□□ -2.12
NUP54-206ENST00000508465 SPRR2EP22531 72 aa1.8□□□□□ -2.12
NUP54-206ENST00000508465 SPRR2BP35325 72 aa1.8□□□□□ -2.12
NUP54-206ENST00000508465 SPRR2AP35326 72 aa1.8□□□□□ -2.12
NUP54-206ENST00000508465 KRTAP20-1Q3LI63 56 aa1.8□□□□□ -2.12
NUP54-206ENST00000508465 A0A0D9SG42 100 aa1.79□□□□□ -2.12
NUP54-206ENST00000508465 H7BZZ5 65 aa1.78□□□□□ -2.12
NUP54-206ENST00000508465 NEBP20929 6669 aa1.78□□□□□ -2.12
NUP54-206ENST00000508465 SPATA8Q6RVD6 105 aa1.77□□□□□ -2.13
NUP54-206ENST00000508465 SERP1Q9Y6X1 66 aa1.77□□□□□ -2.13
NUP54-206ENST00000508465 KRTAP2-3P0C7H8 128 aa1.76□□□□□ -2.13
NUP54-206ENST00000508465 KRTAP2-4Q9BYR9 128 aa1.76□□□□□ -2.13
NUP54-206ENST00000508465 CCDC179H3BU77 68 aa1.75□□□□□ -2.13
NUP54-206ENST00000508465 SPRR2DP22532 72 aa1.73□□□□□ -2.13
NUP54-206ENST00000508465 KRTAP12-1P59990 96 aa1.72□□□□□ -2.13
NUP54-206ENST00000508465 RPS28P62857 69 aaKnown RBP1.72□□□□□ -2.13
NUP54-206ENST00000508465 A0A1B0GU69 56 aa1.71□□□□□ -2.14
NUP54-206ENST00000508465 HMCN1Q96RW7 5635 aa1.7□□□□□ -2.14
NUP54-206ENST00000508465 KRTAP2-1Q9BYU5 128 aa1.7□□□□□ -2.14
NUP54-206ENST00000508465 KRTAP19-7Q3SYF9 63 aa1.68□□□□□ -2.14
NUP54-206ENST00000508465 KRTAP19-5Q3LI72 72 aa1.67□□□□□ -2.14
NUP54-206ENST00000508465 MT1EP04732 61 aa1.66□□□□□ -2.14
NUP54-206ENST00000508465 BRK1Q8WUW1 75 aa1.66□□□□□ -2.14
NUP54-206ENST00000508465 C10orf95Q9H7T3 257 aa1.66□□□□□ -2.14
NUP54-206ENST00000508465 PRR15LQ9BU68 103 aa1.65□□□□□ -2.15
NUP54-206ENST00000508465 LINC01558Q9Y6Z2 57 aa1.65□□□□□ -2.15
NUP54-206ENST00000508465 ATP5EP56381 51 aaPredicted RBP1.64□□□□□ -2.15
NUP54-206ENST00000508465 Q1T7F1 81 aa1.64□□□□□ -2.15
NUP54-206ENST00000508465 KRTAP19-3Q7Z4W3 81 aa1.63□□□□□ -2.15
NUP54-206ENST00000508465 ROMO1P60602 79 aa1.62□□□□□ -2.15
NUP54-206ENST00000508465 TNP1P09430 55 aa1.61□□□□□ -2.15
NUP54-206ENST00000508465 KRTAP12-4P60329 112 aa1.61□□□□□ -2.15
NUP54-206ENST00000508465 UQCR11O14957 56 aa1.6□□□□□ -2.15
NUP54-206ENST00000508465 MT1GP13640 62 aa1.6□□□□□ -2.15
NUP54-206ENST00000508465 MT1LQ93083 61 aa1.59□□□□□ -2.15
NUP54-206ENST00000508465 DSTQ03001 7570 aaKnown RBP1.59□□□□□ -2.16
NUP54-206ENST00000508465 MIR22HGQ0VDD5 57 aa1.58□□□□□ -2.16
NUP54-206ENST00000508465 MT1MQ8N339 61 aa1.58□□□□□ -2.16
NUP54-206ENST00000508465 KRTAP12-3P60328 96 aa1.55□□□□□ -2.16
NUP54-206ENST00000508465 MT4P47944 62 aa1.54□□□□□ -2.16
NUP54-206ENST00000508465 CDC42SE1Q9NRR8 79 aa1.52□□□□□ -2.17
NUP54-206ENST00000508465 GPR98Q8WXG9 6306 aa1.49□□□□□ -2.17
NUP54-206ENST00000508465 AHNAK2Q8IVF2 5795 aa1.47□□□□□ -2.17
NUP54-206ENST00000508465 INE1O15225 51 aa1.43□□□□□ -2.18
NUP54-206ENST00000508465 KRTAP20-2Q3LI61 65 aa1.41□□□□□ -2.18
NUP54-206ENST00000508465 KRTAP5-10Q6L8G5 202 aa1.4□□□□□ -2.19
NUP54-206ENST00000508465 KRTAP6-1Q3LI64 71 aa1.37□□□□□ -2.19
NUP54-206ENST00000508465 MT1AP04731 61 aa1.34□□□□□ -2.19
NUP54-206ENST00000508465 KRTAP6-2Q3LI66 62 aa1.31□□□□□ -2.2
NUP54-206ENST00000508465 SYNE1Q8NF91 8797 aaKnown RBP1.3□□□□□ -2.2
NUP54-206ENST00000508465 AHNAKQ09666 5890 aaKnown RBP1.19□□□□□ -2.22
NUP54-206ENST00000508465 MUC5BQ9HC84 5762 aaPredicted RBP1.18□□□□□ -2.22
NUP54-206ENST00000508465 MUC5ACP98088 5654 aa1.16□□□□□ -2.22
NUP54-206ENST00000508465 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
NUP54-206ENST00000508465 PHGR1C9JFL3 82 aa0.82□□□□□ -2.28
NUP54-206ENST00000508465 PRM1P04553 51 aa0.75□□□□□ -2.29
NUP54-206ENST00000508465 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 236.8 ms