RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 STARD9Q9P2P6 4700 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 DYNC1H1Q14204 4646 aaKnown RBP0.64□□□□□ -2.31
USP53-204ENST00000507906 PKHD1P08F94 4074 aa0.63□□□□□ -2.31
USP53-204ENST00000507906 FLNCQ14315 2725 aa0.63□□□□□ -2.31
USP53-204ENST00000507906 MUC5ACP98088 5654 aa0.63□□□□□ -2.31
USP53-204ENST00000507906 M0QZ58 72 aa0.63□□□□□ -2.31
USP53-204ENST00000507906 UBE2DNLQ8IWF7 75 aa0.63□□□□□ -2.31
USP53-204ENST00000507906 C9orf92A6NGG3 77 aa0.61□□□□□ -2.31
USP53-204ENST00000507906 LRP1BQ9NZR2 4599 aa0.61□□□□□ -2.31
USP53-204ENST00000507906 Q5VSD8 79 aa0.6□□□□□ -2.31
USP53-204ENST00000507906 FAT1Q14517 4588 aa0.6□□□□□ -2.31
USP53-204ENST00000507906 HERC1Q15751 4861 aa0.59□□□□□ -2.31
USP53-204ENST00000507906 TNP1P09430 55 aa0.56□□□□□ -2.32
USP53-204ENST00000507906 MUC17Q685J3 4493 aa0.54□□□□□ -2.32
USP53-204ENST00000507906 KRTAP19-2Q3LHN2 52 aa0.53□□□□□ -2.32
USP53-204ENST00000507906 KRTAP21-1Q3LI58 79 aa0.53□□□□□ -2.32
USP53-204ENST00000507906 KRTAP8-1Q8IUC2 63 aa0.53□□□□□ -2.32
USP53-204ENST00000507906 DNHD1Q96M86 4753 aa0.53□□□□□ -2.32
USP53-204ENST00000507906 LRP2P98164 4655 aa0.52□□□□□ -2.33
USP53-204ENST00000507906 LPAP08519 4548 aa0.52□□□□□ -2.33
USP53-204ENST00000507906 SMR3BP02814 79 aaPredicted RBP0.5□□□□□ -2.33
USP53-204ENST00000507906 HYDINQ4G0P3 5121 aa0.49□□□□□ -2.33
USP53-204ENST00000507906 MT1HL1P0DM35 61 aa0.49□□□□□ -2.33
USP53-204ENST00000507906 KRTAP19-5Q3LI72 72 aa0.49□□□□□ -2.33
USP53-204ENST00000507906 SPRR2GQ9BYE4 73 aa0.49□□□□□ -2.33
USP53-204ENST00000507906 KMT2CQ8NEZ4 4911 aaKnown RBP0.49□□□□□ -2.33
USP53-204ENST00000507906 RYR2Q92736 4967 aa0.47□□□□□ -2.33
USP53-204ENST00000507906 MT1XP80297 61 aa0.47□□□□□ -2.33
USP53-204ENST00000507906 KRTAP19-8Q3LI54 63 aa0.47□□□□□ -2.33
USP53-204ENST00000507906 RYR3Q15413 4870 aa0.46□□□□□ -2.34
USP53-204ENST00000507906 BIRC6Q9NR09 4857 aa0.46□□□□□ -2.34
USP53-204ENST00000507906 M0R2T5 61 aa0.46□□□□□ -2.34
USP53-204ENST00000507906 HMCN2Q8NDA2 5059 aa0.46□□□□□ -2.34
USP53-204ENST00000507906 HERC2O95714 4834 aa0.46□□□□□ -2.34
USP53-204ENST00000507906 MT1BP07438 61 aa0.45□□□□□ -2.34
USP53-204ENST00000507906 KMT2DO14686 5537 aa0.44□□□□□ -2.34
USP53-204ENST00000507906 RYR1P21817 5038 aa0.43□□□□□ -2.34
USP53-204ENST00000507906 PHGR1C9JFL3 82 aa0.43□□□□□ -2.34
USP53-204ENST00000507906 MT2AP02795 61 aa0.42□□□□□ -2.34
USP53-204ENST00000507906 PRM1P04553 51 aa0.42□□□□□ -2.34
USP53-204ENST00000507906 MT1FP04733 61 aa0.42□□□□□ -2.34
USP53-204ENST00000507906 KRTAP19-7Q3SYF9 63 aa0.42□□□□□ -2.34
USP53-204ENST00000507906 SYNE2Q8WXH0 6885 aaKnown RBP0.42□□□□□ -2.34
USP53-204ENST00000507906 SYNE1Q8NF91 8797 aaKnown RBP0.42□□□□□ -2.34
USP53-204ENST00000507906 MT1LQ93083 61 aa0.41□□□□□ -2.34
USP53-204ENST00000507906 MT1AP04731 61 aa0.4□□□□□ -2.35
USP53-204ENST00000507906 MT1EP04732 61 aa0.4□□□□□ -2.35
USP53-204ENST00000507906 MT1HP80294 61 aa0.39□□□□□ -2.35
USP53-204ENST00000507906 PCLOQ9Y6V0 5065 aa0.39□□□□□ -2.35
USP53-204ENST00000507906 MUC2Q02817 5179 aa0.39□□□□□ -2.35
USP53-204ENST00000507906 KRTAP6-2Q3LI66 62 aa0.38□□□□□ -2.35
USP53-204ENST00000507906 SPRR2FQ96RM1 72 aa0.37□□□□□ -2.35
USP53-204ENST00000507906 UBR4Q5T4S7 5183 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 FSIP2Q5CZC0 6907 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 EPPK1P58107 5090 aaKnown RBP0.36□□□□□ -2.35
USP53-204ENST00000507906 MT1GP13640 62 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 MT1MQ8N339 61 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 ABCA13Q86UQ4 5058 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 KIAA1109Q2LD37 5005 aa0.36□□□□□ -2.35
USP53-204ENST00000507906 KRTAP6-1Q3LI64 71 aa0.35□□□□□ -2.35
USP53-204ENST00000507906 FAT4Q6V0I7 4981 aa0.35□□□□□ -2.35
USP53-204ENST00000507906 SPRR2AP35326 72 aa0.34□□□□□ -2.36
USP53-204ENST00000507906 MDN1Q9NU22 5596 aa0.34□□□□□ -2.36
USP53-204ENST00000507906 MACF1Q9UPN3 7388 aaKnown RBP0.34□□□□□ -2.36
USP53-204ENST00000507906 SPRR2EP22531 72 aa0.33□□□□□ -2.36
USP53-204ENST00000507906 SPRR2DP22532 72 aa0.33□□□□□ -2.36
USP53-204ENST00000507906 SPRR2BP35325 72 aa0.33□□□□□ -2.36
USP53-204ENST00000507906 RNF213Q63HN8 5207 aa0.32□□□□□ -2.36
USP53-204ENST00000507906 SSPOA2VEC9 5147 aa0.3□□□□□ -2.36
USP53-204ENST00000507906 USH2AO75445 5202 aa0.28□□□□□ -2.36
USP53-204ENST00000507906 KRTAP19-6Q3LI70 58 aa0.28□□□□□ -2.36
USP53-204ENST00000507906 MUC12Q9UKN1 5478 aa0.24□□□□□ -2.37
USP53-204ENST00000507906 DSTQ03001 7570 aaKnown RBP0.2□□□□□ -2.38
USP53-204ENST00000507906 KRTAP20-2Q3LI61 65 aa0.19□□□□□ -2.38
USP53-204ENST00000507906 KRTAP20-1Q3LI63 56 aa0.15□□□□□ -2.39
USP53-204ENST00000507906 MT4P47944 62 aa0.14□□□□□ -2.39
USP53-204ENST00000507906 NEBP20929 6669 aa0.07□□□□□ -2.4
Retrieved 78 of 20,778 RNA–protein pairs in 46.1 ms