RNA–Protein interactions for RNA: ENST00000505066.5

DDR1-256, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 4

Gene DDR1, Length 556 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-256	ENST00000505066	LCE3A	Q5TA76	89 aa		5.73	□□□□□ -1.49
DDR1-256	ENST00000505066	HMCN1	Q96RW7	5635 aa		5.71	□□□□□ -1.5
DDR1-256	ENST00000505066	TMEM258	P61165	79 aa		5.7	□□□□□ -1.5
DDR1-256	ENST00000505066	KRTAP4-3	Q9BYR4	195 aa		5.61	□□□□□ -1.51
DDR1-256	ENST00000505066	KRTAP5-4	Q6L8H1	288 aa		5.6	□□□□□ -1.51
DDR1-256	ENST00000505066	LINC01558	Q9Y6Z2	57 aa		5.59	□□□□□ -1.51
DDR1-256	ENST00000505066	KRTAP12-3	P60328	96 aa		5.58	□□□□□ -1.52
DDR1-256	ENST00000505066	AHNAK2	Q8IVF2	5795 aa		5.57	□□□□□ -1.52
DDR1-256	ENST00000505066	KRTAP4-6	Q9BYQ5	205 aa		5.53	□□□□□ -1.52
DDR1-256	ENST00000505066	UQCR11	O14957	56 aa		5.51	□□□□□ -1.53
DDR1-256	ENST00000505066	KRTAP5-10	Q6L8G5	202 aa		5.48	□□□□□ -1.53
DDR1-256	ENST00000505066		K7ERS5	55 aa		5.47	□□□□□ -1.53
DDR1-256	ENST00000505066	KRTAP12-4	P60329	112 aa		5.42	□□□□□ -1.54
DDR1-256	ENST00000505066	KRTAP25-1	Q3LHN0	102 aa		5.42	□□□□□ -1.54
DDR1-256	ENST00000505066	KRTAP4-7	Q9BYR0	210 aa		5.42	□□□□□ -1.54
DDR1-256	ENST00000505066		V9GYY9	64 aa		5.38	□□□□□ -1.55
DDR1-256	ENST00000505066	PCP4	P48539	62 aa		5.37	□□□□□ -1.55
DDR1-256	ENST00000505066	SPRR5	A0A1B0GTR4	108 aa		5.36	□□□□□ -1.55
DDR1-256	ENST00000505066	PSPHP1	O15172	72 aa		5.36	□□□□□ -1.55
DDR1-256	ENST00000505066	KRTAP5-3	Q6L8H2	238 aa		5.35	□□□□□ -1.55
DDR1-256	ENST00000505066	MIR22HG	Q0VDD5	57 aa		5.34	□□□□□ -1.55
DDR1-256	ENST00000505066		Q1T7F1	81 aa		5.34	□□□□□ -1.55
DDR1-256	ENST00000505066	KRTAP20-2	Q3LI61	65 aa		5.34	□□□□□ -1.55
DDR1-256	ENST00000505066	KRTAP19-4	Q3LI73	84 aa		5.34	□□□□□ -1.55
DDR1-256	ENST00000505066	KRTAP5-7	Q6L8G8	165 aa		5.33	□□□□□ -1.56
DDR1-256	ENST00000505066	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.26	□□□□□ -1.57
DDR1-256	ENST00000505066	RPS28	P62857	69 aa	Known RBP	5.22	□□□□□ -1.57
DDR1-256	ENST00000505066		A6NED7	52 aa		5.19	□□□□□ -1.58
DDR1-256	ENST00000505066	KRTAP23-1	A1A580	65 aa		5.17	□□□□□ -1.58
DDR1-256	ENST00000505066	LOC100996750	A0A140TA64	210 aa		5.15	□□□□□ -1.59
DDR1-256	ENST00000505066	KRTAP15-1	Q3LI76	137 aa		5.15	□□□□□ -1.59
DDR1-256	ENST00000505066	LCE3C	Q5T5A8	94 aa		5.09	□□□□□ -1.59
DDR1-256	ENST00000505066	SYNE1	Q8NF91	8797 aa	Known RBP	5.07	□□□□□ -1.6
DDR1-256	ENST00000505066	CDC42SE1	Q9NRR8	79 aa		5.04	□□□□□ -1.6
DDR1-256	ENST00000505066	MT1A	P04731	61 aa		4.95	□□□□□ -1.62
DDR1-256	ENST00000505066	KRTAP4-11	Q9BYQ6	195 aa		4.95	□□□□□ -1.62
DDR1-256	ENST00000505066	ROMO1	P60602	79 aa		4.89	□□□□□ -1.63
DDR1-256	ENST00000505066	KRTAP6-1	Q3LI64	71 aa		4.87	□□□□□ -1.63
DDR1-256	ENST00000505066	KRTAP5-2	Q701N4	177 aa		4.85	□□□□□ -1.63
DDR1-256	ENST00000505066	KRTAP9-4	Q9BYQ2	154 aa		4.8	□□□□□ -1.64
DDR1-256	ENST00000505066	KRTAP6-2	Q3LI66	62 aa		4.74	□□□□□ -1.65
DDR1-256	ENST00000505066	AHNAK	Q09666	5890 aa	Known RBP	4.74	□□□□□ -1.65
DDR1-256	ENST00000505066	KRTAP5-8	O75690	187 aa		4.72	□□□□□ -1.65
DDR1-256	ENST00000505066	KRTAP9-9	Q9BYP9	154 aa		4.68	□□□□□ -1.66
DDR1-256	ENST00000505066	MUC5AC	P98088	5654 aa		4.67	□□□□□ -1.66
DDR1-256	ENST00000505066	BRK1	Q8WUW1	75 aa		4.66	□□□□□ -1.66
DDR1-256	ENST00000505066	KRTAP9-6	A8MVA2	160 aa		4.64	□□□□□ -1.67
DDR1-256	ENST00000505066	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.63	□□□□□ -1.67
DDR1-256	ENST00000505066	MT3	P25713	68 aa		4.62	□□□□□ -1.67
DDR1-256	ENST00000505066	OBSCN	Q5VST9	7968 aa		4.6	□□□□□ -1.67
DDR1-256	ENST00000505066	PMAIP1	Q13794	54 aa		4.4	□□□□□ -1.71
DDR1-256	ENST00000505066	KRTAP5-1	Q6L8H4	278 aa		4.38	□□□□□ -1.71
DDR1-256	ENST00000505066	LCE1E	Q5T753	118 aa		4.24	□□□□□ -1.73
DDR1-256	ENST00000505066	PRAC1	Q96KF2	57 aa		4.2	□□□□□ -1.74
DDR1-256	ENST00000505066		H3BS24	57 aa		4.18	□□□□□ -1.74
DDR1-256	ENST00000505066	PRO0628	Q9UI54	55 aa		4.17	□□□□□ -1.74
DDR1-256	ENST00000505066	LCE1B	Q5T7P3	118 aa		4.05	□□□□□ -1.76
DDR1-256	ENST00000505066	KRTAP4-12	Q9BQ66	201 aa		3.98	□□□□□ -1.77
DDR1-256	ENST00000505066	KTN1-AS1	Q86SY8	53 aa		3.96	□□□□□ -1.78
DDR1-256	ENST00000505066	LCE1C	Q5T751	118 aa		3.91	□□□□□ -1.78
DDR1-256	ENST00000505066	KRTAP4-2	Q9BYR5	136 aa		3.91	□□□□□ -1.78
DDR1-256	ENST00000505066	SVIP	Q8NHG7	77 aa		3.84	□□□□□ -1.79
DDR1-256	ENST00000505066	LCE3D	Q9BYE3	92 aa		3.68	□□□□□ -1.82
DDR1-256	ENST00000505066	LCE1F	Q5T754	118 aa		3.55	□□□□□ -1.84
DDR1-256	ENST00000505066	KRTAP5-11	Q6L8G4	156 aa		3.54	□□□□□ -1.84
DDR1-256	ENST00000505066	LUZP6	Q538Z0	58 aa		3.52	□□□□□ -1.85
DDR1-256	ENST00000505066	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.48	□□□□□ -1.85
DDR1-256	ENST00000505066	LCE3E	Q5T5B0	92 aa		3.44	□□□□□ -1.86
DDR1-256	ENST00000505066	PHGR1	C9JFL3	82 aa		3.3	□□□□□ -1.88
DDR1-256	ENST00000505066	KRTAP21-2	Q3LI59	83 aa		3.18	□□□□□ -1.9
DDR1-256	ENST00000505066	NDUFAF8	A1L188	74 aa		2.99	□□□□□ -1.93
DDR1-256	ENST00000505066	KRTAP4-4	Q9BYR3	166 aa		2.98	□□□□□ -1.93
DDR1-256	ENST00000505066	MUC19	Q7Z5P9	8384 aa		2.86	□□□□□ -1.95
DDR1-256	ENST00000505066		A0A0A0MQY5	61 aa		2.66	□□□□□ -1.98
DDR1-256	ENST00000505066	KRTAP21-1	Q3LI58	79 aa		2.54	□□□□□ -2
DDR1-256	ENST00000505066	PRM1	P04553	51 aa		2.52	□□□□□ -2.01
DDR1-256	ENST00000505066	INE1	O15225	51 aa		2.4	□□□□□ -2.03
DDR1-256	ENST00000505066	MUC16	Q8WXI7	14507 aa		2.05	□□□□□ -2.08

Retrieved 78 of 20,778 RNA–protein pairs in 118.3 ms