RNA–Protein interactions for RNA: ENST00000504157.5

POLR2J3-209, Transcript of RNA polymerase II subunit J3, human

TSL 2

Gene POLR2J3, Length 2,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
POLR2J3-209	ENST00000504157	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	6.06	□□□□□ -1.44
POLR2J3-209	ENST00000504157	KRTAP9-6	A0A140TA67	174 aa		6.01	□□□□□ -1.45
POLR2J3-209	ENST00000504157	KRTAP4-7	Q9BYR0	210 aa		6.01	□□□□□ -1.45
POLR2J3-209	ENST00000504157	KMT2D	O14686	5537 aa		5.97	□□□□□ -1.45
POLR2J3-209	ENST00000504157	MT1L	Q93083	61 aa		5.95	□□□□□ -1.46
POLR2J3-209	ENST00000504157	MT1E	P04732	61 aa		5.89	□□□□□ -1.47
POLR2J3-209	ENST00000504157	KRTAP12-4	P60329	112 aa		5.84	□□□□□ -1.47
POLR2J3-209	ENST00000504157	MACF1	Q9UPN3	7388 aa	Known RBP	5.84	□□□□□ -1.47
POLR2J3-209	ENST00000504157	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.7	□□□□□ -1.5
POLR2J3-209	ENST00000504157	SYNE2	Q8WXH0	6885 aa	Known RBP	5.69	□□□□□ -1.5
POLR2J3-209	ENST00000504157	LOC100996750	A0A140TA64	210 aa		5.57	□□□□□ -1.52
POLR2J3-209	ENST00000504157	MT1G	P13640	62 aa		5.52	□□□□□ -1.53
POLR2J3-209	ENST00000504157	KRTAP4-3	Q9BYR4	195 aa		5.49	□□□□□ -1.53
POLR2J3-209	ENST00000504157	KRTAP9-7	A8MTY7	169 aa		5.48	□□□□□ -1.53
POLR2J3-209	ENST00000504157	SPRR2F	Q96RM1	72 aa		5.48	□□□□□ -1.53
POLR2J3-209	ENST00000504157	KRTAP6-3	Q3LI67	103 aa		5.47	□□□□□ -1.53
POLR2J3-209	ENST00000504157	MT1M	Q8N339	61 aa		5.46	□□□□□ -1.54
POLR2J3-209	ENST00000504157	MUC12	Q9UKN1	5478 aa		5.46	□□□□□ -1.54
POLR2J3-209	ENST00000504157	KRTAP5-9	P26371	169 aa		5.44	□□□□□ -1.54
POLR2J3-209	ENST00000504157	KRTAP19-3	Q7Z4W3	81 aa		5.4	□□□□□ -1.54
POLR2J3-209	ENST00000504157	MDN1	Q9NU22	5596 aa		5.37	□□□□□ -1.55
POLR2J3-209	ENST00000504157	MT1A	P04731	61 aa		5.31	□□□□□ -1.56
POLR2J3-209	ENST00000504157	SPRR2E	P22531	72 aa		5.25	□□□□□ -1.57
POLR2J3-209	ENST00000504157	SPRR2B	P35325	72 aa		5.25	□□□□□ -1.57
POLR2J3-209	ENST00000504157	SPRR2A	P35326	72 aa		5.25	□□□□□ -1.57
POLR2J3-209	ENST00000504157	LCE1A	Q5T7P2	110 aa		5.25	□□□□□ -1.57
POLR2J3-209	ENST00000504157	PRM1	P04553	51 aa		5.24	□□□□□ -1.57
POLR2J3-209	ENST00000504157	KRTAP4-9	Q9BYQ8	210 aa		5.24	□□□□□ -1.57
POLR2J3-209	ENST00000504157	LCE3B	Q5TA77	95 aa		5.23	□□□□□ -1.57
POLR2J3-209	ENST00000504157	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.22	□□□□□ -1.57
POLR2J3-209	ENST00000504157	LCE5A	Q5TCM9	118 aa		5.17	□□□□□ -1.58
POLR2J3-209	ENST00000504157	KRTAP4-6	Q9BYQ5	205 aa		5.17	□□□□□ -1.58
POLR2J3-209	ENST00000504157	LCE3E	Q5T5B0	92 aa		5.16	□□□□□ -1.58
POLR2J3-209	ENST00000504157	LCE3D	Q9BYE3	92 aa		5.16	□□□□□ -1.58
POLR2J3-209	ENST00000504157	NEB	P20929	6669 aa		5.14	□□□□□ -1.59
POLR2J3-209	ENST00000504157	DST	Q03001	7570 aa	Known RBP	5.08	□□□□□ -1.6
POLR2J3-209	ENST00000504157	SPRR2D	P22532	72 aa		5.05	□□□□□ -1.6
POLR2J3-209	ENST00000504157	KRTAP6-1	Q3LI64	71 aa		5.03	□□□□□ -1.6
POLR2J3-209	ENST00000504157	KRTAP2-2	Q9BYT5	123 aa		5.03	□□□□□ -1.6
POLR2J3-209	ENST00000504157	SYNE1	Q8NF91	8797 aa	Known RBP	5.02	□□□□□ -1.61
POLR2J3-209	ENST00000504157	KRTAP6-2	Q3LI66	62 aa		4.88	□□□□□ -1.63
POLR2J3-209	ENST00000504157	KRTAP20-1	Q3LI63	56 aa		4.82	□□□□□ -1.64
POLR2J3-209	ENST00000504157	KRTAP9-4	Q9BYQ2	154 aa		4.66	□□□□□ -1.66
POLR2J3-209	ENST00000504157	KRTAP4-12	Q9BQ66	201 aa		4.64	□□□□□ -1.67
POLR2J3-209	ENST00000504157	LCE1E	Q5T753	118 aa		4.52	□□□□□ -1.69
POLR2J3-209	ENST00000504157	KRTAP9-9	Q9BYP9	154 aa		4.5	□□□□□ -1.69
POLR2J3-209	ENST00000504157	KRTAP5-4	Q6L8H1	288 aa		4.48	□□□□□ -1.69
POLR2J3-209	ENST00000504157	MT3	P25713	68 aa		4.46	□□□□□ -1.69
POLR2J3-209	ENST00000504157	LCE4A	Q5TA78	99 aa		4.45	□□□□□ -1.7
POLR2J3-209	ENST00000504157	MT4	P47944	62 aa		4.44	□□□□□ -1.7
POLR2J3-209	ENST00000504157	LCE1D	Q5T752	114 aa		4.38	□□□□□ -1.71
POLR2J3-209	ENST00000504157	HMCN1	Q96RW7	5635 aa		4.32	□□□□□ -1.72
POLR2J3-209	ENST00000504157	OBSCN	Q5VST9	7968 aa		4.31	□□□□□ -1.72
POLR2J3-209	ENST00000504157	KRTAP20-2	Q3LI61	65 aa		4.22	□□□□□ -1.73
POLR2J3-209	ENST00000504157	KRTAP5-3	Q6L8H2	238 aa		4.07	□□□□□ -1.76
POLR2J3-209	ENST00000504157	KRTAP4-2	Q9BYR5	136 aa		4.05	□□□□□ -1.76
POLR2J3-209	ENST00000504157	KRTAP5-2	Q701N4	177 aa		4.02	□□□□□ -1.77
POLR2J3-209	ENST00000504157	KRTAP4-11	Q9BYQ6	195 aa		4.02	□□□□□ -1.77
POLR2J3-209	ENST00000504157	AHNAK2	Q8IVF2	5795 aa		3.9	□□□□□ -1.79
POLR2J3-209	ENST00000504157	MUC5AC	P98088	5654 aa		3.8	□□□□□ -1.8
POLR2J3-209	ENST00000504157	KRTAP5-10	Q6L8G5	202 aa		3.75	□□□□□ -1.81
POLR2J3-209	ENST00000504157	GPR98	Q8WXG9	6306 aa		3.72	□□□□□ -1.81
POLR2J3-209	ENST00000504157	LCE1F	Q5T754	118 aa		3.65	□□□□□ -1.83
POLR2J3-209	ENST00000504157	KRTAP5-1	Q6L8H4	278 aa		3.63	□□□□□ -1.83
POLR2J3-209	ENST00000504157	KRTAP5-8	O75690	187 aa		3.59	□□□□□ -1.83
POLR2J3-209	ENST00000504157	KRTAP5-7	Q6L8G8	165 aa		3.5	□□□□□ -1.85
POLR2J3-209	ENST00000504157	LCE1B	Q5T7P3	118 aa		3.44	□□□□□ -1.86
POLR2J3-209	ENST00000504157	KRTAP21-1	Q3LI58	79 aa		3.42	□□□□□ -1.86
POLR2J3-209	ENST00000504157	LCE1C	Q5T751	118 aa		3.38	□□□□□ -1.87
POLR2J3-209	ENST00000504157	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.27	□□□□□ -1.89
POLR2J3-209	ENST00000504157	KRTAP21-2	Q3LI59	83 aa		3.25	□□□□□ -1.89
POLR2J3-209	ENST00000504157	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.16	□□□□□ -1.9
POLR2J3-209	ENST00000504157	MUC19	Q7Z5P9	8384 aa		3.04	□□□□□ -1.92
POLR2J3-209	ENST00000504157	AHNAK	Q09666	5890 aa	Known RBP	3	□□□□□ -1.93
POLR2J3-209	ENST00000504157	KRTAP5-11	Q6L8G4	156 aa		2.93	□□□□□ -1.94
POLR2J3-209	ENST00000504157	KRTAP4-4	Q9BYR3	166 aa		2.87	□□□□□ -1.95
POLR2J3-209	ENST00000504157	PHGR1	C9JFL3	82 aa		2.53	□□□□□ -2
POLR2J3-209	ENST00000504157	MUC16	Q8WXI7	14507 aa		1.71	□□□□□ -2.14

Retrieved 78 of 20,778 RNA–protein pairs in 98.7 ms