RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 MT1BP07438 61 aa3.72□□□□□ -1.81
SYNE1-230ENST00000495090 FAT4Q6V0I7 4981 aa3.66□□□□□ -1.82
SYNE1-230ENST00000495090 RNF213Q63HN8 5207 aa3.65□□□□□ -1.83
SYNE1-230ENST00000495090 KRTAP10-7P60409 375 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-230ENST00000495090 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-230ENST00000495090 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
SYNE1-230ENST00000495090 KRTAP19-5Q3LI72 72 aa3.53□□□□□ -1.84
SYNE1-230ENST00000495090 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
SYNE1-230ENST00000495090 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
SYNE1-230ENST00000495090 KRTAP2-1Q9BYU5 128 aa3.48□□□□□ -1.85
SYNE1-230ENST00000495090 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
SYNE1-230ENST00000495090 KRTAP19-7Q3SYF9 63 aa3.34□□□□□ -1.87
SYNE1-230ENST00000495090 MT1LQ93083 61 aa3.27□□□□□ -1.89
SYNE1-230ENST00000495090 MT1EP04732 61 aa3.24□□□□□ -1.89
SYNE1-230ENST00000495090 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
SYNE1-230ENST00000495090 KRTAP5-9P26371 169 aa3.21□□□□□ -1.9
SYNE1-230ENST00000495090 KMT2DO14686 5537 aa3.19□□□□□ -1.9
SYNE1-230ENST00000495090 FSIP2Q5CZC0 6907 aa3.1□□□□□ -1.91
SYNE1-230ENST00000495090 KRTAP2-2Q9BYT5 123 aa3.09□□□□□ -1.91
SYNE1-230ENST00000495090 USH2AO75445 5202 aa3.09□□□□□ -1.91
SYNE1-230ENST00000495090 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
SYNE1-230ENST00000495090 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
SYNE1-230ENST00000495090 MT1GP13640 62 aa3.01□□□□□ -1.93
SYNE1-230ENST00000495090 LCE1AQ5T7P2 110 aa3.01□□□□□ -1.93
SYNE1-230ENST00000495090 KRTAP5-1Q6L8H4 278 aa3.01□□□□□ -1.93
SYNE1-230ENST00000495090 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
SYNE1-230ENST00000495090 MT1MQ8N339 61 aa3□□□□□ -1.93
SYNE1-230ENST00000495090 KRTAP4-3Q9BYR4 195 aa2.99□□□□□ -1.93
SYNE1-230ENST00000495090 KRTAP19-6Q3LI70 58 aa2.98□□□□□ -1.93
SYNE1-230ENST00000495090 KRTAP19-3Q7Z4W3 81 aa2.98□□□□□ -1.93
SYNE1-230ENST00000495090 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.94
SYNE1-230ENST00000495090 MT3P25713 68 aa2.95□□□□□ -1.94
SYNE1-230ENST00000495090 MT1AP04731 61 aa2.93□□□□□ -1.94
SYNE1-230ENST00000495090 FCGBPQ9Y6R7 5405 aaPredicted RBP2.9□□□□□ -1.95
SYNE1-230ENST00000495090 CRCT1Q9UGL9 99 aa2.89□□□□□ -1.95
SYNE1-230ENST00000495090 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
SYNE1-230ENST00000495090 MACF1Q9UPN3 7388 aaKnown RBP2.81□□□□□ -1.96
SYNE1-230ENST00000495090 LCE1EQ5T753 118 aa2.81□□□□□ -1.96
SYNE1-230ENST00000495090 KRTAP6-3Q3LI67 103 aa2.8□□□□□ -1.96
SYNE1-230ENST00000495090 LCE3EQ5T5B0 92 aa2.8□□□□□ -1.96
SYNE1-230ENST00000495090 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
SYNE1-230ENST00000495090 SYNE2Q8WXH0 6885 aaKnown RBP2.77□□□□□ -1.97
SYNE1-230ENST00000495090 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-230ENST00000495090 KRTAP6-1Q3LI64 71 aa2.75□□□□□ -1.97
SYNE1-230ENST00000495090 PRM1P04553 51 aa2.74□□□□□ -1.97
SYNE1-230ENST00000495090 MUC12Q9UKN1 5478 aa2.74□□□□□ -1.97
SYNE1-230ENST00000495090 SPRR2FQ96RM1 72 aa2.7□□□□□ -1.98
SYNE1-230ENST00000495090 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
SYNE1-230ENST00000495090 SYNE1Q8NF91 8797 aaKnown RBP2.65□□□□□ -1.99
SYNE1-230ENST00000495090 KRTAP6-2Q3LI66 62 aa2.6□□□□□ -1.99
SYNE1-230ENST00000495090 DSTQ03001 7570 aaKnown RBP2.59□□□□□ -2
SYNE1-230ENST00000495090 MDN1Q9NU22 5596 aa2.58□□□□□ -2
SYNE1-230ENST00000495090 NEBP20929 6669 aa2.54□□□□□ -2
SYNE1-230ENST00000495090 OBSCNQ5VST9 7968 aa2.47□□□□□ -2.01
SYNE1-230ENST00000495090 SPRR2AP35326 72 aa2.46□□□□□ -2.02
SYNE1-230ENST00000495090 SPRR2EP22531 72 aa2.44□□□□□ -2.02
SYNE1-230ENST00000495090 SPRR2BP35325 72 aa2.44□□□□□ -2.02
SYNE1-230ENST00000495090 KRTAP5-8O75690 187 aa2.4□□□□□ -2.02
SYNE1-230ENST00000495090 HMCN1Q96RW7 5635 aa2.38□□□□□ -2.03
SYNE1-230ENST00000495090 SPRR2DP22532 72 aa2.36□□□□□ -2.03
SYNE1-230ENST00000495090 KRTAP20-1Q3LI63 56 aa2.27□□□□□ -2.05
SYNE1-230ENST00000495090 MT4P47944 62 aa2.07□□□□□ -2.08
SYNE1-230ENST00000495090 KRTAP20-2Q3LI61 65 aa2.05□□□□□ -2.08
SYNE1-230ENST00000495090 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
SYNE1-230ENST00000495090 MUC5ACP98088 5654 aa2.03□□□□□ -2.08
SYNE1-230ENST00000495090 GPR98Q8WXG9 6306 aa1.99□□□□□ -2.09
SYNE1-230ENST00000495090 AHNAK2Q8IVF2 5795 aa1.91□□□□□ -2.1
SYNE1-230ENST00000495090 LCE1CQ5T751 118 aa1.87□□□□□ -2.11
SYNE1-230ENST00000495090 LCE1BQ5T7P3 118 aa1.87□□□□□ -2.11
SYNE1-230ENST00000495090 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
SYNE1-230ENST00000495090 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
SYNE1-230ENST00000495090 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
SYNE1-230ENST00000495090 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
SYNE1-230ENST00000495090 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
SYNE1-230ENST00000495090 MUC5BQ9HC84 5762 aaPredicted RBP1.57□□□□□ -2.16
SYNE1-230ENST00000495090 PHGR1C9JFL3 82 aa1.36□□□□□ -2.19
SYNE1-230ENST00000495090 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 9.8 ms