RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
MSH5-SAPCD1-207ENST00000493662 MT1GP13640 62 aa3.71□□□□□ -1.81
MSH5-SAPCD1-207ENST00000493662 KRTAP12-4P60329 112 aa3.68□□□□□ -1.82
MSH5-SAPCD1-207ENST00000493662 KRTAP9-2Q9BYQ4 174 aa3.67□□□□□ -1.82
MSH5-SAPCD1-207ENST00000493662 LOC100996750A0A140TA64 210 aa3.66□□□□□ -1.82
MSH5-SAPCD1-207ENST00000493662 KRTAP19-7Q3SYF9 63 aa3.66□□□□□ -1.82
MSH5-SAPCD1-207ENST00000493662 MT1EP04732 61 aa3.63□□□□□ -1.83
MSH5-SAPCD1-207ENST00000493662 MT1LQ93083 61 aa3.62□□□□□ -1.83
MSH5-SAPCD1-207ENST00000493662 KRTAP19-6Q3LI70 58 aa3.62□□□□□ -1.83
MSH5-SAPCD1-207ENST00000493662 SPRR2EP22531 72 aa3.56□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 SPRR2BP35325 72 aa3.56□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 SPRR2AP35326 72 aa3.56□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 LCE2DQ5TA82 110 aaPredicted RBP3.55□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 KRTAP9-6A8MVA2 160 aa3.53□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
MSH5-SAPCD1-207ENST00000493662 KRTAP19-3Q7Z4W3 81 aa3.52□□□□□ -1.85
MSH5-SAPCD1-207ENST00000493662 KRTAP19-4Q3LI73 84 aa3.49□□□□□ -1.85
MSH5-SAPCD1-207ENST00000493662 KRTAP9-6A0A140TA67 174 aa3.47□□□□□ -1.85
MSH5-SAPCD1-207ENST00000493662 MT1MQ8N339 61 aa3.46□□□□□ -1.85
MSH5-SAPCD1-207ENST00000493662 KRTAP2-3P0C7H8 128 aa3.46□□□□□ -1.86
MSH5-SAPCD1-207ENST00000493662 KRTAP2-4Q9BYR9 128 aa3.46□□□□□ -1.86
MSH5-SAPCD1-207ENST00000493662 KRTAP2-1Q9BYU5 128 aa3.46□□□□□ -1.86
MSH5-SAPCD1-207ENST00000493662 SPRR2DP22532 72 aa3.39□□□□□ -1.87
MSH5-SAPCD1-207ENST00000493662 KRTAP4-9Q9BYQ8 210 aa3.34□□□□□ -1.87
MSH5-SAPCD1-207ENST00000493662 LCE3DQ9BYE3 92 aa3.3□□□□□ -1.88
MSH5-SAPCD1-207ENST00000493662 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
MSH5-SAPCD1-207ENST00000493662 PRM1P04553 51 aa3.27□□□□□ -1.89
MSH5-SAPCD1-207ENST00000493662 LCE5AQ5TCM9 118 aa3.23□□□□□ -1.89
MSH5-SAPCD1-207ENST00000493662 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
MSH5-SAPCD1-207ENST00000493662 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
MSH5-SAPCD1-207ENST00000493662 MT4P47944 62 aa3.2□□□□□ -1.9
MSH5-SAPCD1-207ENST00000493662 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
MSH5-SAPCD1-207ENST00000493662 KRTAP9-7A8MTY7 169 aa3.16□□□□□ -1.9
MSH5-SAPCD1-207ENST00000493662 KRTAP6-1Q3LI64 71 aa3.16□□□□□ -1.9
MSH5-SAPCD1-207ENST00000493662 KRTAP6-3Q3LI67 103 aa3.02□□□□□ -1.93
MSH5-SAPCD1-207ENST00000493662 MT1AP04731 61 aa3.02□□□□□ -1.93
MSH5-SAPCD1-207ENST00000493662 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
MSH5-SAPCD1-207ENST00000493662 KRTAP5-9P26371 169 aa2.96□□□□□ -1.94
MSH5-SAPCD1-207ENST00000493662 NEBP20929 6669 aa2.93□□□□□ -1.94
MSH5-SAPCD1-207ENST00000493662 MT3P25713 68 aa2.91□□□□□ -1.94
MSH5-SAPCD1-207ENST00000493662 KRTAP4-6Q9BYQ5 205 aa2.86□□□□□ -1.95
MSH5-SAPCD1-207ENST00000493662 LCE1DQ5T752 114 aa2.85□□□□□ -1.95
MSH5-SAPCD1-207ENST00000493662 KRTAP9-4Q9BYQ2 154 aa2.84□□□□□ -1.96
MSH5-SAPCD1-207ENST00000493662 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
MSH5-SAPCD1-207ENST00000493662 KRTAP2-2Q9BYT5 123 aa2.77□□□□□ -1.97
MSH5-SAPCD1-207ENST00000493662 KRTAP20-1Q3LI63 56 aa2.77□□□□□ -1.97
MSH5-SAPCD1-207ENST00000493662 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
MSH5-SAPCD1-207ENST00000493662 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
MSH5-SAPCD1-207ENST00000493662 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
MSH5-SAPCD1-207ENST00000493662 HMCN1Q96RW7 5635 aa2.67□□□□□ -1.98
MSH5-SAPCD1-207ENST00000493662 MUC5ACP98088 5654 aa2.64□□□□□ -1.99
MSH5-SAPCD1-207ENST00000493662 KRTAP20-2Q3LI61 65 aa2.6□□□□□ -1.99
MSH5-SAPCD1-207ENST00000493662 LCE4AQ5TA78 99 aa2.59□□□□□ -1.99
MSH5-SAPCD1-207ENST00000493662 KRTAP4-11Q9BYQ6 195 aa2.44□□□□□ -2.02
MSH5-SAPCD1-207ENST00000493662 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
MSH5-SAPCD1-207ENST00000493662 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
MSH5-SAPCD1-207ENST00000493662 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
MSH5-SAPCD1-207ENST00000493662 MUC5BQ9HC84 5762 aaPredicted RBP2.26□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 KRTAP4-12Q9BQ66 201 aa2.26□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 KRTAP4-2Q9BYR5 136 aa2.26□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 LCE1FQ5T754 118 aa2.24□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 KRTAP5-3Q6L8H2 238 aa2.22□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 KRTAP5-2Q701N4 177 aa2.22□□□□□ -2.05
MSH5-SAPCD1-207ENST00000493662 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
MSH5-SAPCD1-207ENST00000493662 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
MSH5-SAPCD1-207ENST00000493662 KRTAP9-9Q9BYP9 154 aa2.1□□□□□ -2.07
MSH5-SAPCD1-207ENST00000493662 KRTAP5-8O75690 187 aa2.09□□□□□ -2.08
MSH5-SAPCD1-207ENST00000493662 KRTAP5-1Q6L8H4 278 aa2□□□□□ -2.09
MSH5-SAPCD1-207ENST00000493662 KRTAP5-7Q6L8G8 165 aa1.99□□□□□ -2.09
MSH5-SAPCD1-207ENST00000493662 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
MSH5-SAPCD1-207ENST00000493662 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.12
MSH5-SAPCD1-207ENST00000493662 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.79□□□□□ -2.12
MSH5-SAPCD1-207ENST00000493662 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
MSH5-SAPCD1-207ENST00000493662 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
MSH5-SAPCD1-207ENST00000493662 PHGR1C9JFL3 82 aa1.48□□□□□ -2.17
MSH5-SAPCD1-207ENST00000493662 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 91.8 ms