RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KRTAP12-1P59990 96 aa4.62□□□□□ -1.67
PRPF40A-211ENST00000493468 MUC5ACP98088 5654 aa4.61□□□□□ -1.67
PRPF40A-211ENST00000493468 MUC5BQ9HC84 5762 aaPredicted RBP4.58□□□□□ -1.68
PRPF40A-211ENST00000493468 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.58□□□□□ -1.68
PRPF40A-211ENST00000493468 SPATA8Q6RVD6 105 aa4.57□□□□□ -1.68
PRPF40A-211ENST00000493468 TNP1P09430 55 aa4.55□□□□□ -1.68
PRPF40A-211ENST00000493468 PCP4L1A6NKN8 68 aa4.54□□□□□ -1.68
PRPF40A-211ENST00000493468 KRTAP23-1A1A580 65 aa4.52□□□□□ -1.69
PRPF40A-211ENST00000493468 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
PRPF40A-211ENST00000493468 SEC61GP60059 68 aa4.5□□□□□ -1.69
PRPF40A-211ENST00000493468 SPANXA2-OT1Q8N9U9 137 aa4.5□□□□□ -1.69
PRPF40A-211ENST00000493468 SERP1Q9Y6X1 66 aa4.5□□□□□ -1.69
PRPF40A-211ENST00000493468 KRTAP5-8O75690 187 aa4.49□□□□□ -1.69
PRPF40A-211ENST00000493468 KRTAP5-2Q701N4 177 aa4.49□□□□□ -1.69
PRPF40A-211ENST00000493468 A0A1B0GU33 70 aa4.47□□□□□ -1.69
PRPF40A-211ENST00000493468 SMIM20Q8N5G0 67 aa4.46□□□□□ -1.7
PRPF40A-211ENST00000493468 SNURFQ9Y675 71 aa4.4□□□□□ -1.71
PRPF40A-211ENST00000493468 SMIM26A0A096LP01 95 aa4.37□□□□□ -1.71
PRPF40A-211ENST00000493468 COA5Q86WW8 74 aa4.36□□□□□ -1.71
PRPF40A-211ENST00000493468 KRTAP15-1Q3LI76 137 aa4.34□□□□□ -1.71
PRPF40A-211ENST00000493468 J3QR89 54 aa4.32□□□□□ -1.72
PRPF40A-211ENST00000493468 A0A1B0GV90 55 aa4.29□□□□□ -1.72
PRPF40A-211ENST00000493468 A8MU10 97 aa4.29□□□□□ -1.72
PRPF40A-211ENST00000493468 MT1AP04731 61 aa4.27□□□□□ -1.73
PRPF40A-211ENST00000493468 OBSCNQ5VST9 7968 aa4.27□□□□□ -1.73
PRPF40A-211ENST00000493468 KRTAP6-1Q3LI64 71 aa4.25□□□□□ -1.73
PRPF40A-211ENST00000493468 KRTAP6-2Q3LI66 62 aa4.16□□□□□ -1.74
PRPF40A-211ENST00000493468 SERP2Q8N6R1 65 aa4.16□□□□□ -1.74
PRPF40A-211ENST00000493468 A0A1B0GU69 56 aa4.15□□□□□ -1.75
PRPF40A-211ENST00000493468 K7ERU9 68 aa4.13□□□□□ -1.75
PRPF40A-211ENST00000493468 KRTAP5-11Q6L8G4 156 aa4.13□□□□□ -1.75
PRPF40A-211ENST00000493468 LCE3CQ5T5A8 94 aa4.11□□□□□ -1.75
PRPF40A-211ENST00000493468 KRTAP25-1Q3LHN0 102 aa4.1□□□□□ -1.75
PRPF40A-211ENST00000493468 KRTAP5-1Q6L8H4 278 aa4.1□□□□□ -1.75
PRPF40A-211ENST00000493468 PRR15LQ9BU68 103 aa3.93□□□□□ -1.78
PRPF40A-211ENST00000493468 MT3P25713 68 aa3.92□□□□□ -1.78
PRPF40A-211ENST00000493468 H7BZZ5 65 aa3.9□□□□□ -1.79
PRPF40A-211ENST00000493468 KRTAP9-6A8MVA2 160 aa3.89□□□□□ -1.79
PRPF40A-211ENST00000493468 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
PRPF40A-211ENST00000493468 COX7CP15954 63 aa3.81□□□□□ -1.8
PRPF40A-211ENST00000493468 SVIPQ8NHG7 77 aa3.78□□□□□ -1.8
PRPF40A-211ENST00000493468 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
PRPF40A-211ENST00000493468 UQCR11O14957 56 aa3.74□□□□□ -1.81
PRPF40A-211ENST00000493468 ANAPC13Q9BS18 74 aa3.74□□□□□ -1.81
PRPF40A-211ENST00000493468 LINC01558Q9Y6Z2 57 aa3.73□□□□□ -1.81
PRPF40A-211ENST00000493468 K7ERS5 55 aa3.64□□□□□ -1.83
PRPF40A-211ENST00000493468 CCDC179H3BU77 68 aa3.6□□□□□ -1.83
PRPF40A-211ENST00000493468 ATP5EP56381 51 aaPredicted RBP3.6□□□□□ -1.83
PRPF40A-211ENST00000493468 MIR22HGQ0VDD5 57 aa3.59□□□□□ -1.83
PRPF40A-211ENST00000493468 A0A0A0MQY5 61 aa3.58□□□□□ -1.84
PRPF40A-211ENST00000493468 TMEM258P61165 79 aa3.54□□□□□ -1.84
PRPF40A-211ENST00000493468 RPS28P62857 69 aaKnown RBP3.52□□□□□ -1.85
PRPF40A-211ENST00000493468 PCP4P48539 62 aa3.5□□□□□ -1.85
PRPF40A-211ENST00000493468 LCE1BQ5T7P3 118 aa3.5□□□□□ -1.85
PRPF40A-211ENST00000493468 LCE1CQ5T751 118 aa3.48□□□□□ -1.85
PRPF40A-211ENST00000493468 CDC42SE1Q9NRR8 79 aa3.37□□□□□ -1.87
PRPF40A-211ENST00000493468 V9GYY9 64 aa3.36□□□□□ -1.87
PRPF40A-211ENST00000493468 Q1T7F1 81 aa3.32□□□□□ -1.88
PRPF40A-211ENST00000493468 ROMO1P60602 79 aa3.28□□□□□ -1.88
PRPF40A-211ENST00000493468 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
PRPF40A-211ENST00000493468 PSPHP1O15172 72 aa3.23□□□□□ -1.89
PRPF40A-211ENST00000493468 A6NED7 52 aa3.17□□□□□ -1.9
PRPF40A-211ENST00000493468 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
PRPF40A-211ENST00000493468 PRAC1Q96KF2 57 aa2.93□□□□□ -1.94
PRPF40A-211ENST00000493468 BRK1Q8WUW1 75 aa2.92□□□□□ -1.94
PRPF40A-211ENST00000493468 LCE3DQ9BYE3 92 aa2.85□□□□□ -1.95
PRPF40A-211ENST00000493468 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
PRPF40A-211ENST00000493468 PMAIP1Q13794 54 aa2.77□□□□□ -1.97
PRPF40A-211ENST00000493468 PRO0628Q9UI54 55 aa2.74□□□□□ -1.97
PRPF40A-211ENST00000493468 NDUFAF8A1L188 74 aa2.73□□□□□ -1.97
PRPF40A-211ENST00000493468 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
PRPF40A-211ENST00000493468 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
PRPF40A-211ENST00000493468 KTN1-AS1Q86SY8 53 aa2.57□□□□□ -2
PRPF40A-211ENST00000493468 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
PRPF40A-211ENST00000493468 LUZP6Q538Z0 58 aa2.24□□□□□ -2.05
PRPF40A-211ENST00000493468 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
PRPF40A-211ENST00000493468 INE1O15225 51 aa1.64□□□□□ -2.15
PRPF40A-211ENST00000493468 PRM1P04553 51 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms