RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 KRTAP5-4Q6L8H1 288 aa4.3□□□□□ -1.72
COL6A1-205ENST00000492851 HMCN1Q96RW7 5635 aa4.29□□□□□ -1.72
COL6A1-205ENST00000492851 ATP5EP56381 51 aaPredicted RBP4.29□□□□□ -1.72
COL6A1-205ENST00000492851 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
COL6A1-205ENST00000492851 LINC01558Q9Y6Z2 57 aa4.24□□□□□ -1.73
COL6A1-205ENST00000492851 KRTAP12-3P60328 96 aa4.23□□□□□ -1.73
COL6A1-205ENST00000492851 UQCR11O14957 56 aa4.2□□□□□ -1.74
COL6A1-205ENST00000492851 KRTAP4-6Q9BYQ5 205 aa4.2□□□□□ -1.74
COL6A1-205ENST00000492851 TMEM258P61165 79 aa4.18□□□□□ -1.74
COL6A1-205ENST00000492851 KRTAP5-10Q6L8G5 202 aa4.16□□□□□ -1.74
COL6A1-205ENST00000492851 KRTAP25-1Q3LHN0 102 aa4.13□□□□□ -1.75
COL6A1-205ENST00000492851 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
COL6A1-205ENST00000492851 KRTAP19-4Q3LI73 84 aa4.12□□□□□ -1.75
COL6A1-205ENST00000492851 AHNAK2Q8IVF2 5795 aa4.12□□□□□ -1.75
COL6A1-205ENST00000492851 K7ERS5 55 aa4.09□□□□□ -1.75
COL6A1-205ENST00000492851 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP12-4P60329 112 aa4.07□□□□□ -1.76
COL6A1-205ENST00000492851 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP5-5Q701N2 237 aaPredicted RBP4.06□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP20-2Q3LI61 65 aa4.05□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP5-3Q6L8H2 238 aa4.05□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP5-7Q6L8G8 165 aa4.04□□□□□ -1.76
COL6A1-205ENST00000492851 KRTAP23-1A1A580 65 aa4□□□□□ -1.77
COL6A1-205ENST00000492851 V9GYY9 64 aa3.98□□□□□ -1.77
COL6A1-205ENST00000492851 SYNE1Q8NF91 8797 aaKnown RBP3.95□□□□□ -1.78
COL6A1-205ENST00000492851 LOC100996750A0A140TA64 210 aa3.93□□□□□ -1.78
COL6A1-205ENST00000492851 KRTAP15-1Q3LI76 137 aa3.93□□□□□ -1.78
COL6A1-205ENST00000492851 LCE3CQ5T5A8 94 aa3.89□□□□□ -1.79
COL6A1-205ENST00000492851 PSPHP1O15172 72 aa3.88□□□□□ -1.79
COL6A1-205ENST00000492851 Q1T7F1 81 aa3.88□□□□□ -1.79
COL6A1-205ENST00000492851 PCP4P48539 62 aa3.86□□□□□ -1.79
COL6A1-205ENST00000492851 CDC42SE1Q9NRR8 79 aa3.81□□□□□ -1.8
COL6A1-205ENST00000492851 A6NED7 52 aa3.78□□□□□ -1.8
COL6A1-205ENST00000492851 RPS28P62857 69 aaKnown RBP3.78□□□□□ -1.8
COL6A1-205ENST00000492851 MT1AP04731 61 aa3.77□□□□□ -1.81
COL6A1-205ENST00000492851 KRTAP4-11Q9BYQ6 195 aa3.75□□□□□ -1.81
COL6A1-205ENST00000492851 KRTAP5-2Q701N4 177 aa3.73□□□□□ -1.81
COL6A1-205ENST00000492851 ROMO1P60602 79 aa3.72□□□□□ -1.81
COL6A1-205ENST00000492851 KRTAP6-1Q3LI64 71 aa3.71□□□□□ -1.82
COL6A1-205ENST00000492851 KRTAP9-4Q9BYQ2 154 aa3.67□□□□□ -1.82
COL6A1-205ENST00000492851 KRTAP5-8O75690 187 aa3.6□□□□□ -1.83
COL6A1-205ENST00000492851 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
COL6A1-205ENST00000492851 KRTAP6-2Q3LI66 62 aa3.59□□□□□ -1.83
COL6A1-205ENST00000492851 OBSCNQ5VST9 7968 aa3.55□□□□□ -1.84
COL6A1-205ENST00000492851 MT3P25713 68 aa3.5□□□□□ -1.85
COL6A1-205ENST00000492851 KRTAP9-9Q9BYP9 154 aa3.49□□□□□ -1.85
COL6A1-205ENST00000492851 MUC5ACP98088 5654 aa3.46□□□□□ -1.85
COL6A1-205ENST00000492851 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
COL6A1-205ENST00000492851 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
COL6A1-205ENST00000492851 KRTAP5-1Q6L8H4 278 aa3.36□□□□□ -1.87
COL6A1-205ENST00000492851 BRK1Q8WUW1 75 aa3.36□□□□□ -1.87
COL6A1-205ENST00000492851 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
COL6A1-205ENST00000492851 PMAIP1Q13794 54 aa3.14□□□□□ -1.91
COL6A1-205ENST00000492851 PRO0628Q9UI54 55 aa3.07□□□□□ -1.92
COL6A1-205ENST00000492851 LCE1BQ5T7P3 118 aa3.01□□□□□ -1.93
COL6A1-205ENST00000492851 PRAC1Q96KF2 57 aa3.01□□□□□ -1.93
COL6A1-205ENST00000492851 LCE1CQ5T751 118 aa3□□□□□ -1.93
COL6A1-205ENST00000492851 KRTAP4-2Q9BYR5 136 aa3□□□□□ -1.93
COL6A1-205ENST00000492851 KTN1-AS1Q86SY8 53 aa2.89□□□□□ -1.95
COL6A1-205ENST00000492851 SVIPQ8NHG7 77 aa2.86□□□□□ -1.95
COL6A1-205ENST00000492851 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
COL6A1-205ENST00000492851 KRTAP4-12Q9BQ66 201 aa2.74□□□□□ -1.97
COL6A1-205ENST00000492851 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
COL6A1-205ENST00000492851 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
COL6A1-205ENST00000492851 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
COL6A1-205ENST00000492851 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
COL6A1-205ENST00000492851 LUZP6Q538Z0 58 aa2.54□□□□□ -2
COL6A1-205ENST00000492851 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
COL6A1-205ENST00000492851 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
COL6A1-205ENST00000492851 NDUFAF8A1L188 74 aa2.23□□□□□ -2.05
COL6A1-205ENST00000492851 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
COL6A1-205ENST00000492851 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
COL6A1-205ENST00000492851 H3BS24 57 aa2.03□□□□□ -2.08
COL6A1-205ENST00000492851 A0A0A0MQY5 61 aa1.95□□□□□ -2.1
COL6A1-205ENST00000492851 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
COL6A1-205ENST00000492851 PRM1P04553 51 aa1.86□□□□□ -2.11
COL6A1-205ENST00000492851 INE1O15225 51 aa1.82□□□□□ -2.12
COL6A1-205ENST00000492851 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 42.4 ms