RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KRTAP4-9Q9BYQ8 210 aa8.62□□□□□ -1.03
UPF3A-209ENST00000492270 KRTAP4-3Q9BYR4 195 aa8.6□□□□□ -1.03
UPF3A-209ENST00000492270 PSPHP1O15172 72 aa8.58□□□□□ -1.04
UPF3A-209ENST00000492270 KRTAP12-3P60328 96 aa8.53□□□□□ -1.04
UPF3A-209ENST00000492270 Q1T7F1 81 aa8.52□□□□□ -1.05
UPF3A-209ENST00000492270 V9GYY9 64 aa8.52□□□□□ -1.05
UPF3A-209ENST00000492270 KRTAP25-1Q3LHN0 102 aa8.44□□□□□ -1.06
UPF3A-209ENST00000492270 K7ERS5 55 aa8.43□□□□□ -1.06
UPF3A-209ENST00000492270 KRTAP4-7Q9BYR0 210 aa8.43□□□□□ -1.06
UPF3A-209ENST00000492270 LCE1DQ5T752 114 aa8.42□□□□□ -1.06
UPF3A-209ENST00000492270 LCE4AQ5TA78 99 aa8.39□□□□□ -1.07
UPF3A-209ENST00000492270 MT4P47944 62 aa8.34□□□□□ -1.07
UPF3A-209ENST00000492270 RPS28P62857 69 aaKnown RBP8.3□□□□□ -1.08
UPF3A-209ENST00000492270 KRTAP5-4Q6L8H1 288 aa8.28□□□□□ -1.08
UPF3A-209ENST00000492270 A6NED7 52 aa8.26□□□□□ -1.09
UPF3A-209ENST00000492270 HMCN1Q96RW7 5635 aa8.24□□□□□ -1.09
UPF3A-209ENST00000492270 GPR98Q8WXG9 6306 aa8.21□□□□□ -1.1
UPF3A-209ENST00000492270 KRTAP4-6Q9BYQ5 205 aa8.13□□□□□ -1.11
UPF3A-209ENST00000492270 KRTAP23-1A1A580 65 aa8.09□□□□□ -1.11
UPF3A-209ENST00000492270 CDC42SE1Q9NRR8 79 aa8.04□□□□□ -1.12
UPF3A-209ENST00000492270 KRTAP5-5Q701N2 237 aaPredicted RBP8.02□□□□□ -1.13
UPF3A-209ENST00000492270 KRTAP15-1Q3LI76 137 aa7.99□□□□□ -1.13
UPF3A-209ENST00000492270 LOC100996750A0A140TA64 210 aa7.98□□□□□ -1.13
UPF3A-209ENST00000492270 KRTAP19-4Q3LI73 84 aa7.94□□□□□ -1.14
UPF3A-209ENST00000492270 AHNAK2Q8IVF2 5795 aa7.93□□□□□ -1.14
UPF3A-209ENST00000492270 ROMO1P60602 79 aa7.92□□□□□ -1.14
UPF3A-209ENST00000492270 LCE3CQ5T5A8 94 aa7.87□□□□□ -1.15
UPF3A-209ENST00000492270 KRTAP20-2Q3LI61 65 aa7.82□□□□□ -1.16
UPF3A-209ENST00000492270 KRTAP5-10Q6L8G5 202 aa7.77□□□□□ -1.17
UPF3A-209ENST00000492270 SPRR5A0A1B0GTR4 108 aa7.75□□□□□ -1.17
UPF3A-209ENST00000492270 KRTAP12-4P60329 112 aa7.73□□□□□ -1.17
UPF3A-209ENST00000492270 SYNE1Q8NF91 8797 aaKnown RBP7.68□□□□□ -1.18
UPF3A-209ENST00000492270 KRTAP5-3Q6L8H2 238 aa7.61□□□□□ -1.19
UPF3A-209ENST00000492270 KRTAP9-6A8MVA2 160 aa7.49□□□□□ -1.21
UPF3A-209ENST00000492270 MT1AP04731 61 aa7.48□□□□□ -1.21
UPF3A-209ENST00000492270 KRTAP6-1Q3LI64 71 aa7.46□□□□□ -1.22
UPF3A-209ENST00000492270 KRTAP5-7Q6L8G8 165 aa7.43□□□□□ -1.22
UPF3A-209ENST00000492270 BRK1Q8WUW1 75 aa7.35□□□□□ -1.23
UPF3A-209ENST00000492270 KRTAP5-2Q701N4 177 aa7.27□□□□□ -1.25
UPF3A-209ENST00000492270 KRTAP9-4Q9BYQ2 154 aa7.21□□□□□ -1.26
UPF3A-209ENST00000492270 KRTAP6-2Q3LI66 62 aa7.1□□□□□ -1.27
UPF3A-209ENST00000492270 KRTAP4-11Q9BYQ6 195 aa7.1□□□□□ -1.27
UPF3A-209ENST00000492270 PMAIP1Q13794 54 aa6.92□□□□□ -1.3
UPF3A-209ENST00000492270 PRO0628Q9UI54 55 aa6.89□□□□□ -1.31
UPF3A-209ENST00000492270 KRTAP5-8O75690 187 aa6.88□□□□□ -1.31
UPF3A-209ENST00000492270 MT3P25713 68 aa6.8□□□□□ -1.32
UPF3A-209ENST00000492270 OBSCNQ5VST9 7968 aa6.75□□□□□ -1.33
UPF3A-209ENST00000492270 PRAC1Q96KF2 57 aa6.58□□□□□ -1.36
UPF3A-209ENST00000492270 KRTAP5-1Q6L8H4 278 aa6.51□□□□□ -1.37
UPF3A-209ENST00000492270 MUC5BQ9HC84 5762 aaPredicted RBP6.48□□□□□ -1.37
UPF3A-209ENST00000492270 KTN1-AS1Q86SY8 53 aa6.47□□□□□ -1.37
UPF3A-209ENST00000492270 KRTAP9-9Q9BYP9 154 aa6.47□□□□□ -1.37
UPF3A-209ENST00000492270 MUC5ACP98088 5654 aa6.47□□□□□ -1.37
UPF3A-209ENST00000492270 AHNAKQ09666 5890 aaKnown RBP6.44□□□□□ -1.38
UPF3A-209ENST00000492270 LCE1EQ5T753 118 aa6.21□□□□□ -1.42
UPF3A-209ENST00000492270 SVIPQ8NHG7 77 aa6.1□□□□□ -1.43
UPF3A-209ENST00000492270 KRTAP4-2Q9BYR5 136 aa5.93□□□□□ -1.46
UPF3A-209ENST00000492270 LCE1BQ5T7P3 118 aa5.9□□□□□ -1.46
UPF3A-209ENST00000492270 LCE1CQ5T751 118 aa5.78□□□□□ -1.48
UPF3A-209ENST00000492270 LCE3DQ9BYE3 92 aa5.67□□□□□ -1.5
UPF3A-209ENST00000492270 LUZP6Q538Z0 58 aa5.42□□□□□ -1.54
UPF3A-209ENST00000492270 KRTAP4-12Q9BQ66 201 aa5.36□□□□□ -1.55
UPF3A-209ENST00000492270 LCE3EQ5T5B0 92 aa5.35□□□□□ -1.55
UPF3A-209ENST00000492270 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.27□□□□□ -1.57
UPF3A-209ENST00000492270 KRTAP5-11Q6L8G4 156 aa5.24□□□□□ -1.57
UPF3A-209ENST00000492270 LCE1FQ5T754 118 aa5.03□□□□□ -1.6
UPF3A-209ENST00000492270 KRTAP21-2Q3LI59 83 aa4.91□□□□□ -1.62
UPF3A-209ENST00000492270 NDUFAF8A1L188 74 aa4.87□□□□□ -1.63
UPF3A-209ENST00000492270 PHGR1C9JFL3 82 aa4.53□□□□□ -1.68
UPF3A-209ENST00000492270 KRTAP4-4Q9BYR3 166 aa4.52□□□□□ -1.69
UPF3A-209ENST00000492270 MUC19Q7Z5P9 8384 aa4.16□□□□□ -1.74
UPF3A-209ENST00000492270 A0A0A0MQY5 61 aa4.09□□□□□ -1.75
UPF3A-209ENST00000492270 PRM1P04553 51 aa4.09□□□□□ -1.75
UPF3A-209ENST00000492270 INE1O15225 51 aa4.01□□□□□ -1.77
UPF3A-209ENST00000492270 KRTAP21-1Q3LI58 79 aa3.39□□□□□ -1.87
UPF3A-209ENST00000492270 H3BS24 57 aa3.26□□□□□ -1.89
UPF3A-209ENST00000492270 MUC16Q8WXI7 14507 aa2.94□□□□□ -1.94
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms