RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 MUC17Q685J3 4493 aa2.64□□□□□ -1.99
VPS41-214ENST00000490924 CRCT1Q9UGL9 99 aa2.64□□□□□ -1.99
VPS41-214ENST00000490924 PLAC4Q8WY50 150 aa2.63□□□□□ -1.99
VPS41-214ENST00000490924 FSIP2Q5CZC0 6907 aa2.63□□□□□ -1.99
VPS41-214ENST00000490924 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
VPS41-214ENST00000490924 FLGP20930 4061 aaPredicted RBP2.61□□□□□ -1.99
VPS41-214ENST00000490924 CAMK2N1Q7Z7J9 78 aa2.58□□□□□ -2
VPS41-214ENST00000490924 TNP1P09430 55 aa2.57□□□□□ -2
VPS41-214ENST00000490924 LUZP6Q538Z0 58 aa2.57□□□□□ -2
VPS41-214ENST00000490924 KRTAP4-1Q9BYQ7 146 aa2.57□□□□□ -2
VPS41-214ENST00000490924 SPRR5A0A1B0GTR4 108 aa2.55□□□□□ -2
VPS41-214ENST00000490924 SPRR2GQ9BYE4 73 aa2.53□□□□□ -2
VPS41-214ENST00000490924 LCE1CQ5T751 118 aa2.46□□□□□ -2.02
VPS41-214ENST00000490924 LCE1BQ5T7P3 118 aa2.46□□□□□ -2.02
VPS41-214ENST00000490924 KRTAP5-5Q701N2 237 aaPredicted RBP2.45□□□□□ -2.02
VPS41-214ENST00000490924 KRTAP19-8Q3LI54 63 aa2.41□□□□□ -2.02
VPS41-214ENST00000490924 KRTAP8-1Q8IUC2 63 aa2.41□□□□□ -2.02
VPS41-214ENST00000490924 MT1HP80294 61 aa2.36□□□□□ -2.03
VPS41-214ENST00000490924 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
VPS41-214ENST00000490924 SSPOA2VEC9 5147 aa2.34□□□□□ -2.03
VPS41-214ENST00000490924 USH2AO75445 5202 aa2.34□□□□□ -2.03
VPS41-214ENST00000490924 MT2AP02795 61 aa2.34□□□□□ -2.03
VPS41-214ENST00000490924 INE1O15225 51 aa2.33□□□□□ -2.04
VPS41-214ENST00000490924 FCGBPQ9Y6R7 5405 aaPredicted RBP2.33□□□□□ -2.04
VPS41-214ENST00000490924 MT1FP04733 61 aa2.32□□□□□ -2.04
VPS41-214ENST00000490924 M0R2T5 61 aa2.31□□□□□ -2.04
VPS41-214ENST00000490924 KRTAP10-10P60014 251 aa2.31□□□□□ -2.04
VPS41-214ENST00000490924 PRO2289Q9P1D8 64 aa2.3□□□□□ -2.04
VPS41-214ENST00000490924 MT1XP80297 61 aa2.29□□□□□ -2.04
VPS41-214ENST00000490924 SYNE2Q8WXH0 6885 aaKnown RBP2.28□□□□□ -2.04
VPS41-214ENST00000490924 MT1BP07438 61 aa2.28□□□□□ -2.04
VPS41-214ENST00000490924 MACF1Q9UPN3 7388 aaKnown RBP2.28□□□□□ -2.04
VPS41-214ENST00000490924 KRTAP12-3P60328 96 aa2.27□□□□□ -2.05
VPS41-214ENST00000490924 NEBP20929 6669 aa2.2□□□□□ -2.06
VPS41-214ENST00000490924 KRTAP20-1Q3LI63 56 aa2.2□□□□□ -2.06
VPS41-214ENST00000490924 KRTAP6-3Q3LI67 103 aa2.19□□□□□ -2.06
VPS41-214ENST00000490924 MUC12Q9UKN1 5478 aa2.16□□□□□ -2.06
VPS41-214ENST00000490924 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
VPS41-214ENST00000490924 KRTAP19-5Q3LI72 72 aa2.1□□□□□ -2.07
VPS41-214ENST00000490924 KRTAP19-6Q3LI70 58 aa2.08□□□□□ -2.08
VPS41-214ENST00000490924 KMT2DO14686 5537 aa2.07□□□□□ -2.08
VPS41-214ENST00000490924 KRTAP2-3P0C7H8 128 aa2.07□□□□□ -2.08
VPS41-214ENST00000490924 KRTAP2-4Q9BYR9 128 aa2.07□□□□□ -2.08
VPS41-214ENST00000490924 KRTAP2-1Q9BYU5 128 aa2.07□□□□□ -2.08
VPS41-214ENST00000490924 GPR98Q8WXG9 6306 aa2.06□□□□□ -2.08
VPS41-214ENST00000490924 KRTAP19-7Q3SYF9 63 aa2.04□□□□□ -2.08
VPS41-214ENST00000490924 LCE3DQ9BYE3 92 aa2.03□□□□□ -2.08
VPS41-214ENST00000490924 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
VPS41-214ENST00000490924 MT1EP04732 61 aa2□□□□□ -2.09
VPS41-214ENST00000490924 MT1LQ93083 61 aa2□□□□□ -2.09
VPS41-214ENST00000490924 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
VPS41-214ENST00000490924 MT1GP13640 62 aa1.9□□□□□ -2.11
VPS41-214ENST00000490924 SPRR2EP22531 72 aa1.89□□□□□ -2.11
VPS41-214ENST00000490924 SPRR2BP35325 72 aa1.89□□□□□ -2.11
VPS41-214ENST00000490924 SPRR2AP35326 72 aa1.89□□□□□ -2.11
VPS41-214ENST00000490924 KRTAP19-3Q7Z4W3 81 aa1.87□□□□□ -2.11
VPS41-214ENST00000490924 MT1MQ8N339 61 aa1.85□□□□□ -2.11
VPS41-214ENST00000490924 SPRR2FQ96RM1 72 aa1.84□□□□□ -2.11
VPS41-214ENST00000490924 SPRR2DP22532 72 aa1.83□□□□□ -2.12
VPS41-214ENST00000490924 MT1AP04731 61 aa1.81□□□□□ -2.12
VPS41-214ENST00000490924 DSTQ03001 7570 aaKnown RBP1.8□□□□□ -2.12
VPS41-214ENST00000490924 AHNAK2Q8IVF2 5795 aa1.78□□□□□ -2.13
VPS41-214ENST00000490924 HMCN1Q96RW7 5635 aa1.77□□□□□ -2.13
VPS41-214ENST00000490924 KRTAP12-4P60329 112 aa1.76□□□□□ -2.13
VPS41-214ENST00000490924 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
VPS41-214ENST00000490924 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
VPS41-214ENST00000490924 MT4P47944 62 aa1.64□□□□□ -2.15
VPS41-214ENST00000490924 KRTAP6-1Q3LI64 71 aa1.63□□□□□ -2.15
VPS41-214ENST00000490924 AHNAKQ09666 5890 aaKnown RBP1.57□□□□□ -2.16
VPS41-214ENST00000490924 PRM1P04553 51 aa1.53□□□□□ -2.16
VPS41-214ENST00000490924 MUC5ACP98088 5654 aa1.53□□□□□ -2.16
VPS41-214ENST00000490924 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
VPS41-214ENST00000490924 KRTAP6-2Q3LI66 62 aa1.49□□□□□ -2.17
VPS41-214ENST00000490924 SYNE1Q8NF91 8797 aaKnown RBP1.48□□□□□ -2.17
VPS41-214ENST00000490924 KRTAP20-2Q3LI61 65 aa1.44□□□□□ -2.18
VPS41-214ENST00000490924 KRTAP21-1Q3LI58 79 aa1.05□□□□□ -2.24
VPS41-214ENST00000490924 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
VPS41-214ENST00000490924 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 135.4 ms